commit: 4c08c4d51d42df4ccf28aeaa23324358cb0c007b Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Thu Apr 16 06:28:32 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Thu Apr 16 06:28:32 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4c08c4d5
In CVS Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-biology/vcftools/ChangeLog | 20 ------------ sci-biology/vcftools/metadata.xml | 5 --- sci-biology/vcftools/vcftools-0.1.12b.ebuild | 48 ---------------------------- 3 files changed, 73 deletions(-) diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog deleted file mode 100644 index b994b84..0000000 --- a/sci-biology/vcftools/ChangeLog +++ /dev/null @@ -1,20 +0,0 @@ -# ChangeLog for sci-biology/vcftools -# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: $ - - 19 Mar 2015; Martin Mokrejs <[email protected]> - vcftools-0.1.12b.ebuild: - EAPI bump - - 19 Mar 2015; Martin Mokrejs <[email protected]> - vcftools-0.1.12b.ebuild: - removing KEYWORDS until the perl files are installed to some other place. At - the moment I get: 'perl-module.eclass: Suspicious environment values found. - PERL5LIB="/usr/share/vcftools/perl"' - -*vcftools-0.1.12b (11 Mar 2015) - - 11 Mar 2015; Martin Mokrejs <[email protected]> +metadata.xml, - +vcftools-0.1.12b.ebuild: - version bump; vcftools-0.1.8-buildsystem.patch does not apply to current tree - so using sed calls from within ebuild to mimic the tweaks diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml deleted file mode 100644 index f17a827..0000000 --- a/sci-biology/vcftools/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <herd>sci-biology</herd> -</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.12b.ebuild b/sci-biology/vcftools/vcftools-0.1.12b.ebuild deleted file mode 100644 index 839a643..0000000 --- a/sci-biology/vcftools/vcftools-0.1.12b.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI=5 - -inherit eutils toolchain-funcs - -MY_P="${PN}_${PV}" - -DESCRIPTION="Tools for working with VCF (Variant Call Format) files" -HOMEPAGE="http://vcftools.sourceforge.net/"; -SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="lapack" - -RDEPEND="lapack? ( virtual/lapack )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - # epatch "${FILESDIR}"/${P}-buildsystem.patch # patch is outdated - sed -e 's#-O2#$(CXXFLAGS)#;s#-llapack#`$(PKG_CONFIG) --libs lapack`#' -i cpp/Makefile || die - tc-export CXX PKG_CONFIG -} - -src_compile() { - local myconf - use lapack && myconf="VCFTOOLS_PCA=1" - emake -C cpp ${myconf} -} - -src_install(){ - dobin cpp/${PN} - insinto /usr/share/${PN}/perl - doins perl/*.pm - exeinto /usr/share/${PN}/perl - doexe perl/{fill,vcf}-* - echo 'COLON_SEPARATED=PERL5LIB' > "${S}/99${PN}" - echo "PERL5LIB=/usr/share/${PN}/perl" >> "${S}/99${PN}" - doenvd "${S}/99${PN}" - dodoc README.txt -}
