commit: 010e78adee1aeda00f2deb425a93dc01b1e7b15c Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Tue Feb 3 16:26:14 2026 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Tue Feb 3 16:26:14 2026 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=010e78ad
sci-biology/mafft: drop 7.490 Signed-off-by: David Seifert <soap <AT> gentoo.org> sci-biology/mafft/Manifest | 1 - sci-biology/mafft/mafft-7.490.ebuild | 62 ------------------------------------ 2 files changed, 63 deletions(-) diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest index 3b448e45c618..0cf31ad3c018 100644 --- a/sci-biology/mafft/Manifest +++ b/sci-biology/mafft/Manifest @@ -1,2 +1 @@ -DIST mafft-7.490-without-extensions-src.tgz 605510 BLAKE2B f432ea3001f1d9c18cecea50d19f48570ffe7edf56e64088f8854acc1ee17fd7c1696244133f90ae0bf916f4499becfbfa8a770ca51a370219191f2a29f73db4 SHA512 dd87b731fdee48828da93c715ef480de474870de2fa42727e8d34b62bc136fb486dd9079ca2acdf1745f0a621fe4f413e25c05f7534f1673b6f9c1199ce70b8e DIST mafft-7.525-without-extensions-src.tgz 622798 BLAKE2B d1c58a2f44aacf00917351a5118b694684c64f128a777096a56904acb0c4ed728408fa58399c8d1dfcd38cb0733dc86b830b5b5bec582875577796f5aa75a811 SHA512 84b3ae1cabca0af0286713bfcfc1de3fd912214106c3b836e465d643d3a68dd6c8df697e424a82c324936b4d448c73e465fb16bcf3fc44e98270c16580e9dbb3 diff --git a/sci-biology/mafft/mafft-7.490.ebuild b/sci-biology/mafft/mafft-7.490.ebuild deleted file mode 100644 index 6a77001b1904..000000000000 --- a/sci-biology/mafft/mafft-7.490.ebuild +++ /dev/null @@ -1,62 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit flag-o-matic toolchain-funcs - -EXTENSIONS="-without-extensions" - -DESCRIPTION="Multiple sequence alignments using a variety of algorithms" -HOMEPAGE="https://mafft.cbrc.jp/alignment/software/index.html"; -SRC_URI="https://mafft.cbrc.jp/alignment/software/${P}${EXTENSIONS}-src.tgz"; -S="${WORKDIR}/${P}${EXTENSIONS}" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~x64-macos" - -src_prepare() { - default - - sed \ - -e 's/(PREFIX)\/man/(PREFIX)\/share\/man/' \ - -e 's:$(LDFLAGS)::g' \ - -e 's:$(CC) -o $@:$(CC) $(LDFLAGS) -o $@:g' \ - -e 's:$(CC) -shared -o $@:$(CC) $(LDFLAGS) -shared -o $@:g' \ - -e '/INSTALL/s: -s : :g' \ - -i core/Makefile || die -} - -src_configure() { - append-cflags -Wno-unused-result -} - -src_compile() { - emake -C core \ - PREFIX="${EPREFIX}"/usr \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS}" -} - -src_test() { - export MAFFT_BINARIES="${S}"/core - cd test || die - bash ../core/mafft sample > test.fftns2 || die "Tests failed" - bash ../core/mafft --maxiterate 100 sample > test.fftnsi || die "Tests failed" - bash ../core/mafft --globalpair sample > test.gins1 || die "Tests failed" - bash ../core/mafft --globalpair --maxiterate 100 sample > test.ginsi || die "Tests failed" - bash ../core/mafft --localpair sample > test.lins1 || die "Tests failed" - bash ../core/mafft --localpair --maxiterate 100 sample > test.linsi || die "Tests failed" - - diff test.fftns2 sample.fftns2 || die "Tests failed" - diff test.fftnsi sample.fftnsi || die "Tests failed" - diff test.gins1 sample.gins1 || die "Tests failed" - diff test.ginsi sample.ginsi || die "Tests failed" - diff test.lins1 sample.lins1 || die "Tests failed" -} - -src_install() { - emake -C core DESTDIR="${D}" STRIP=":" PREFIX="${EPREFIX}"/usr install - dodoc readme -}
