jlec 15/03/31 10:53:54 Modified: ChangeLog Added: allpathslg-52415.ebuild Log: Version BUmp; move to EAPI=5 and autotools-utils.eclass; thanks Martin Mokrejs for preparing the bump (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.19 sci-biology/allpathslg/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.19&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?rev=1.19&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/ChangeLog?r1=1.18&r2=1.19 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v retrieving revision 1.18 retrieving revision 1.19 diff -u -r1.18 -r1.19 --- ChangeLog 31 Mar 2015 09:35:15 -0000 1.18 +++ ChangeLog 31 Mar 2015 10:53:53 -0000 1.19 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/allpathslg # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.18 2015/03/31 09:35:15 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.19 2015/03/31 10:53:53 jlec Exp $ + +*allpathslg-52415 (31 Mar 2015) + + 31 Mar 2015; Justin Lecher <[email protected]> +allpathslg-52415.ebuild: + Version BUmp; move to EAPI=5 and autotools-utils.eclass; thanks Martin Mokrejs + for preparing the bump 31 Mar 2015; Justin Lecher <[email protected]> allpathslg-47093.ebuild: prefix love 1.1 sci-biology/allpathslg/allpathslg-52415.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-52415.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/allpathslg/allpathslg-52415.ebuild?rev=1.1&content-type=text/plain Index: allpathslg-52415.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-52415.ebuild,v 1.1 2015/03/31 10:53:53 jlec Exp $ EAPI=5 AUTOTOOLS_AUTORECONF=true inherit autotools-utils flag-o-matic DESCRIPTION="De novo assembly of whole-genome shotgun microreads" # see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"; SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"; LICENSE="MIT" SLOT="0" KEYWORDS="~amd64" IUSE="openmp" DEPEND=" dev-libs/boost !sci-biology/allpaths sci-biology/vaal" RDEPEND="" pkg_pretend() { # as of release 44849, GCC 4.7.0 (or higher) is required # seems pre gcc-4.7 users must stay with: # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz if [[ ${MERGE_TYPE} != binary ]]; then [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \ die "You need to use gcc >4.7" fi } src_prepare() { local i sed \ -e 's/-ggdb//' \ -e 's:CEHCK:CHECK:g' \ -i configure.ac || die for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do sed -e "/bin_PROGRAMS/s: ${i} : :g" -i src/Makefile.am || die done autotools-utils_src_prepare } src_configure() { local myeconfargs=( $(use_enable openmp) ) autotools-utils_src_configure }
