commit: 43d38bb3cdfe595def6f13cd1748eda9b1933e27 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Apr 15 21:33:35 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Apr 15 21:33:35 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=43d38bb3
sci-biology/bedtools: version bump per bug #505538 Package-Manager: portage-2.2.7 --- sci-biology/bedtools/ChangeLog | 9 ++++++++ sci-biology/bedtools/bedtools-2.19.1.ebuild | 33 +++++++++++++++++++++++++++++ sci-biology/bedtools/metadata.xml | 16 ++++++++++++++ 3 files changed, 58 insertions(+) diff --git a/sci-biology/bedtools/ChangeLog b/sci-biology/bedtools/ChangeLog new file mode 100644 index 0000000..530ceb5 --- /dev/null +++ b/sci-biology/bedtools/ChangeLog @@ -0,0 +1,9 @@ +# ChangeLog for sci-biology/bedtools +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*bedtools-2.19.1 (15 Apr 2014) + + 15 Apr 2014; Martin Mokrejs <[email protected]> + +bedtools-2.19.1.ebuild, +metadata.xml: + sci-biology/bedtools: version bump per bug #505538 diff --git a/sci-biology/bedtools/bedtools-2.19.1.ebuild b/sci-biology/bedtools/bedtools-2.19.1.ebuild new file mode 100644 index 0000000..fd87585 --- /dev/null +++ b/sci-biology/bedtools/bedtools-2.19.1.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bedtools/bedtools-2.16.2.ebuild,v 1.1 2012/05/29 02:54:40 weaver Exp $ + +EAPI=4 + +inherit flag-o-matic + +DESCRIPTION="Tools for manipulation and analysis of BED, GFF/GTF, VCF, and SAM/BAM file formats" +HOMEPAGE="http://code.google.com/p/bedtools/"; +SRC_URI="https://github.com/arq5x/bedtools2/releases/download/v${PV}/bedtools-${PV}.tar.gz"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/bedtools2-${PV}" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i \ + -e '/export CXXFLAGS/ d' \ + -e '/export CXX/ d' \ + Makefile || die +} + +src_install() { + dobin bin/* + dodoc README* RELEASE_HISTORY + insinto /usr/share/${PN} + doins -r genomes +} diff --git a/sci-biology/bedtools/metadata.xml b/sci-biology/bedtools/metadata.xml new file mode 100644 index 0000000..d841c4b --- /dev/null +++ b/sci-biology/bedtools/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <herd>proxy-maintainers</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <longdescription> + BEDTools: a flexible suite of utilities for comparing genomic features. + </longdescription> + <upstream> + <remote-id type="google-code">bedtools</remote-id> + </upstream> +</pkgmetadata>
