commit:     dbdc00ed10a8d9f4c7e1bd411aba6860279a5385
Author:     Nicolas PARLANT <nicolas.parlant <AT> parhuet <DOT> fr>
AuthorDate: Mon Oct 27 13:51:19 2025 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Tue Nov  4 11:16:03 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dbdc00ed

sci-chemistry/avogadro2: add 1.102.1

vtk is replaced by jkqtplotter for charts
add avogadrolibs[archive],required by the plugins download manager
add pixi as optfeature for plugins env

Signed-off-by: Nicolas PARLANT <nicolas.parlant <AT> parhuet.fr>
Part-of: https://github.com/gentoo/gentoo/pull/44352
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-chemistry/avogadro2/Manifest                 |  2 +
 sci-chemistry/avogadro2/avogadro2-1.102.1.ebuild | 90 ++++++++++++++++++++++++
 2 files changed, 92 insertions(+)

diff --git a/sci-chemistry/avogadro2/Manifest b/sci-chemistry/avogadro2/Manifest
index cd95dd4fe0ec..0701163d70e5 100644
--- a/sci-chemistry/avogadro2/Manifest
+++ b/sci-chemistry/avogadro2/Manifest
@@ -2,3 +2,5 @@ DIST avogadro2-1.100.0-i18n.tar.gz 1225588 BLAKE2B 
a548952828764c3bbb2b487ecdfa6
 DIST avogadro2-1.100.0.tar.gz 3079141 BLAKE2B 
f9ddd73b9c85099db8594300976fcb64d9b74ac8349a611c536efacaf57aa7f10b7f5b2325b6a9cc8f64354768bbb4af9bc280784a9042c9226af68d06e519c7
 SHA512 
689999bad26d575c879bf3e64a32afb3a2b95ece26b7338b417a4f8a552ef97908c75cf4aa09880b657b74255ead18e9025b0faf46dfb6e3329e00647ce12c48
 DIST avogadro2-1.101.0-i18n.tar.gz 1403440 BLAKE2B 
595e76179350a3aebf9fe66df97dcc73d037b96c5dbf860e995cc5c3a8098a4a2f1d447398108584c22234cccc2cc1b7425361b5ba30b86d7d4143f1d5975868
 SHA512 
4cdecdb75bd5f1a1adbcdc56652489d87fd7c118bbf69305bf2b8d46a11a85f8ff45dffdbb4bf533531419902edc48dfb040e7b3a235e3ef0521302eda5180ec
 DIST avogadro2-1.101.0.tar.gz 3474642 BLAKE2B 
6c973855c9440ef9b5d52f9d95ad597821704057850e7403a7824d2e053404dcb35889d63bdbf717206a75485e4994025401230662f05b2215c13ae83540424f
 SHA512 
1d3b096f9d89f0bac3e4e9ee1095eb030409595c3eb2890785fd1f0991a9cf4eee30ba02ff2babf33d1f05a40aeb6fb18bad36845942e1c9201de6c3b49884fa
+DIST avogadro2-1.102.1-i18n.tar.gz 1450971 BLAKE2B 
187cd08f1ae674776bb9d72ef70a107e10e94cdd75d546864c4dc9812825c2b8090333b19ecea8dd97f9207283dc6a724e1cbe3155549f5b8be4407a7291900f
 SHA512 
e425ac58cffea2798425dacd9418349242e82b4dee4ab74289483bbd408a1aa374a36e1a05f743522bace48700145ba4cfdb693d8e4b2d743f79ecbafb00aafe
+DIST avogadro2-1.102.1.tar.gz 3832563 BLAKE2B 
81200635b377825afc724d26e025953ff8e1e90e3230ef1b13df86827cfdd754fc6a3833d0bcd5c165869a7e8a20f2590b20bd51c2abe4c3e9a0a6527307500b
 SHA512 
40492ba4b5ac998e7e9e0fea36b18a9e43ec20d75a176806a4b18eafca17d4ea55d3969978e8cdc03a6825e692acc4707c8b8494ba3e38592f6adc7d32034761

diff --git a/sci-chemistry/avogadro2/avogadro2-1.102.1.ebuild 
b/sci-chemistry/avogadro2/avogadro2-1.102.1.ebuild
new file mode 100644
index 000000000000..688272c71d74
--- /dev/null
+++ b/sci-chemistry/avogadro2/avogadro2-1.102.1.ebuild
@@ -0,0 +1,90 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+MY_PN=avogadroapp
+inherit cmake optfeature xdg
+
+DESCRIPTION="Advanced molecule editor and visualizer 2"
+HOMEPAGE="https://www.openchemistry.org/ https://two.avogadro.cc/";
+SRC_URI="
+       https://github.com/OpenChemistry/${MY_PN}/archive/${PV}.tar.gz -> 
${P}.tar.gz
+       https://github.com/OpenChemistry/avogadro-i18n/archive/${PV}.tar.gz -> 
${P}-i18n.tar.gz
+"
+S="${WORKDIR}/${MY_PN}-${PV}"
+
+LICENSE="BSD GPL-2+"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc"
+
+RDEPEND="
+       dev-qt/qtbase:6[concurrent,gui,network,opengl,ssl,widgets]
+       ~sci-libs/avogadrolibs-${PV}[archive,qt6]
+"
+DEPEND="
+       ${RDEPEND}
+       dev-cpp/eigen:3
+       sci-libs/jkqtplotter
+"
+BDEPEND="doc? ( app-text/doxygen )"
+
+src_unpack() {
+       default
+       mv "${WORKDIR}"/avogadro-i18n-${PV} "${WORKDIR}"/avogadro-i18n || die
+}
+
+src_prepare() {
+       if use doc; then
+               doxygen -u docs/doxyfile.in 2>/dev/null || die
+       fi
+
+       # disable automatic update dialog
+       sed -e '\@  checkUpdate()@s:^:  //:' \
+               -i avogadro/mainwindow.cpp || die
+
+       cmake_src_prepare
+}
+
+src_configure() {
+       local mycmakeargs=(
+               -DCMAKE_SKIP_RPATH=ON
+               -DBUILD_DOCUMENTATION=$(usex doc)
+               # rpc/molequeue is abandoned
+               # see https://github.com/OpenChemistry/avogadroapp/issues/561
+               -DAvogadro_ENABLE_RPC=OFF
+               # test requires qttesting/paraview
+               -DENABLE_TESTING=OFF
+               -DQT_VERSION=6
+       )
+
+       # Need this to prevent overwriting the documentation OUTDIR
+       use doc && mycmakeargs+=(
+                       -DChemData_SOURCE_DIR="${S}"
+                       -DChemData_BINARY_DIR="${BUILD_DIR}"
+       )
+
+       cmake_src_configure
+}
+
+src_compile() {
+       cmake_src_compile
+
+       use doc && cmake_build documentation
+}
+
+src_install() {
+       use doc && local HTML_DOCS=( "${BUILD_DIR}"/docs/html/. )
+
+       cmake_src_install
+
+       # remove CONTRIBUTING, LICENSE and duplicate README
+       rm -r "${ED}"/usr/share/doc/${PF}/avogadro2 || die
+}
+
+pkg_postinst() {
+       optfeature "environments of downloaded plugins" dev-util/pixi
+
+       xdg_pkg_postinst
+}

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