commit: ba80f4042addbeb24766f8763c60e1322f4ac5bc Author: Jonas Maaskola <jonas <AT> maaskola <DOT> de> AuthorDate: Wed Mar 18 00:09:04 2015 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Wed Mar 18 07:23:22 2015 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ba80f404
sci-biology/discrover: version bump; drop USE flag Package-Manager: portage-2.2.14 sci-biology/discrover/ChangeLog | 6 ++++++ ...scrover-1.5.2.ebuild => discrover-1.6.0.ebuild} | 18 ++--------------- sci-biology/discrover/discrover-9999.ebuild | 18 ++--------------- sci-biology/discrover/metadata.xml | 23 ++++++++++------------ 4 files changed, 20 insertions(+), 45 deletions(-) diff --git a/sci-biology/discrover/ChangeLog b/sci-biology/discrover/ChangeLog index aba75b4..f4e2dcd 100644 --- a/sci-biology/discrover/ChangeLog +++ b/sci-biology/discrover/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*discrover-1.6.0 (18 Mar 2015) + + 18 Mar 2015; Jonas Maaskola <[email protected]> +discrover-1.6.0.ebuild, + -discrover-1.5.2.ebuild, discrover-9999.ebuild, metadata.xml: + sci-biology/discrover: version bump; drop USE flag + 18 Feb 2015; Justin Lecher <[email protected]> discrover-1.5.2.ebuild, discrover-9999.ebuild, metadata.xml: sci-biology/discrover: fix SLOT operators; correct ruby deps diff --git a/sci-biology/discrover/discrover-1.5.2.ebuild b/sci-biology/discrover/discrover-1.6.0.ebuild similarity index 83% rename from sci-biology/discrover/discrover-1.5.2.ebuild rename to sci-biology/discrover/discrover-1.6.0.ebuild index f0992e2..5f1281c 100644 --- a/sci-biology/discrover/discrover-1.5.2.ebuild +++ b/sci-biology/discrover/discrover-1.6.0.ebuild @@ -3,11 +3,7 @@ # $Header: $ EAPI=5 - -USE_RUBY="ruby19" -RUBY_OPTIONAL=yes - -inherit cmake-utils ruby-fakegem +inherit cmake-utils DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover"; @@ -16,21 +12,12 @@ SRC_URI="https://github.com/maaskola/discrover/archive/${PV}.tar.gz -> ${P}.tar. LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc" +IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc" RDEPEND=" dev-libs/boost cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) - tikzlogo? ( - $(ruby_implementations_depend) - dev-texlive/texlive-latex - dev-texlive/texlive-latexextra - dev-tex/pgf - dev-tex/xcolor - media-gfx/imagemagick - ) - misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -58,7 +45,6 @@ src_configure() { $(cmake-utils_use_with dreme DREME) $(cmake-utils_use_with doc DOC) $(cmake-utils_use_with lto LTO) - $(cmake-utils_use_with tikzlogo TIKZLOGO) $(cmake-utils_use_with misc_scripts MISC_SCRIPTS) $(cmake-utils_use_with rmathlib RMATHLIB) $(cmake-utils_use_with tcmalloc TCMALLOC) diff --git a/sci-biology/discrover/discrover-9999.ebuild b/sci-biology/discrover/discrover-9999.ebuild index 8131e9b..6958803 100644 --- a/sci-biology/discrover/discrover-9999.ebuild +++ b/sci-biology/discrover/discrover-9999.ebuild @@ -3,11 +3,7 @@ # $Header: $ EAPI=5 - -USE_RUBY="ruby19" -RUBY_OPTIONAL=yes - -inherit cmake-utils git-r3 ruby-fakegem +inherit cmake-utils git-r3 DESCRIPTION="A sequence motif discovery tool that uses discriminative learning" HOMEPAGE="https://github.com/maaskola/discrover"; @@ -17,21 +13,12 @@ EGIT_REPO_URI="https://github.com/maaskola/${PN}"; LICENSE="GPL-3+" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="+cairo dreme doc +lto tikzlogo misc_scripts +rmathlib tcmalloc" +IUSE="+cairo dreme doc +lto misc_scripts +rmathlib tcmalloc" RDEPEND=" dev-libs/boost cairo? ( x11-libs/cairo ) dreme? ( sci-biology/meme ) - tikzlogo? ( - $(ruby_implementations_depend) - dev-texlive/texlive-latex - dev-texlive/texlive-latexextra - dev-tex/pgf - dev-tex/xcolor - media-gfx/imagemagick - ) - misc_scripts? ( $(ruby_implementations_depend) ) rmathlib? ( dev-lang/R ) tcmalloc? ( dev-util/google-perftools ) " @@ -59,7 +46,6 @@ src_configure() { $(cmake-utils_use_with dreme DREME) $(cmake-utils_use_with doc DOC) $(cmake-utils_use_with lto LTO) - $(cmake-utils_use_with tikzlogo TIKZLOGO) $(cmake-utils_use_with misc_scripts MISC_SCRIPTS) $(cmake-utils_use_with rmathlib RMATHLIB) $(cmake-utils_use_with tcmalloc TCMALLOC) diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml index 6bfaf6c..fb652d7 100644 --- a/sci-biology/discrover/metadata.xml +++ b/sci-biology/discrover/metadata.xml @@ -7,22 +7,19 @@ </maintainer> <use> <flag name="cairo"> - Use Cairo for sequence logo plotting capabilities - </flag> + Use Cairo for sequence logo plotting capabilities + </flag> <flag name="dreme"> - Enable usage of DREME from the MEME package for seeding - </flag> + Enable usage of DREME from the MEME package for seeding + </flag> <flag name="lto"> - Compile with link-time optimization (LTO) - </flag> - <flag name="tikzlogo"> - Enable LaTeX/TikZ based ruby script for sequence logo drawing - </flag> + Compile with link-time optimization (LTO) + </flag> <flag name="misc_scripts"> - Install miscellaneous scripts, e.g. for sequence length statistics - </flag> + Install miscellaneous scripts + </flag> <flag name="rmathlib"> - Link to the standalone Rmathlib for statistical routines - </flag> + Link to the standalone Rmathlib for statistical routines + </flag> </use> </pkgmetadata>
