commit: 9716e3294313e3daf116efad89b5349eb1b2ccbb Author: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de> AuthorDate: Mon May 5 23:31:10 2025 +0000 Commit: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik <DOT> de> CommitDate: Tue May 6 13:52:07 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9716e329
sci-biology/ncbi-vdb: treeclean Signed-off-by: Alexander Puck Neuwirth <alexander <AT> neuwirth-informatik.de> sci-biology/ncbi-vdb/metadata.xml | 12 -------- sci-biology/ncbi-vdb/ncbi-vdb-2.11.2.ebuild | 45 ----------------------------- 2 files changed, 57 deletions(-) diff --git a/sci-biology/ncbi-vdb/metadata.xml b/sci-biology/ncbi-vdb/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/ncbi-vdb/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/ncbi-vdb/ncbi-vdb-2.11.2.ebuild b/sci-biology/ncbi-vdb/ncbi-vdb-2.11.2.ebuild deleted file mode 100644 index 15f83b00c..000000000 --- a/sci-biology/ncbi-vdb/ncbi-vdb-2.11.2.ebuild +++ /dev/null @@ -1,45 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_10 ) -inherit python-single-r1 - -DESCRIPTION=" NCBI SRA ( Sequence Read Archive )" -HOMEPAGE="https://github.com/ncbi/ncbi-vdb"; -SRC_URI="https://github.com/ncbi/ncbi-vdb/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="public-domain" -SLOT="0" -# Sandbox error: tries to access files from within deleted dir in compile phase -KEYWORDS="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS} - sci-libs/hdf5 - sci-biology/ngs -" -RDEPEND="${DEPEND}" - -src_configure() { - # this is some non-standard configure script - ./configure \ - --with-ngs-sdk-prefix=/usr/ngs/ngs-sdk \ - --with-hdf5-prefix=/usr \ - || die -} - -src_install() { - dodir /usr/include - dodir /etc/profile.d - # Hard way around hard coded paths - find . -type f -exec sed -i \ - -e "s:/usr/local:${ED}/usr:g" \ - -e "s:/etc:${ED}/etc:g" \ - -e "s:/usr/lib:${ED}/usr/lib:g" \ - -e "s:/usr/include:${ED}/usr/include:g" \ - -e "s:setup.py -q install:setup.py install --root="${D}":g" \ - {} \; || die - default -}
