jlec 15/03/13 11:04:23 Modified: metadata.xml autodock-4.2.3-r1.ebuild ChangeLog Added: autodock-4.2.6.ebuild Log: Version Bump; Move to new python eclasses (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.3 sci-chemistry/autodock/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/metadata.xml?rev=1.3&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/metadata.xml?rev=1.3&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/metadata.xml?r1=1.2&r2=1.3 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/metadata.xml,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- metadata.xml 24 Mar 2009 21:39:42 -0000 1.2 +++ metadata.xml 13 Mar 2015 11:04:23 -0000 1.3 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <herd>sci-chemistry</herd> + <herd>sci-chemistry</herd> </pkgmetadata> 1.4 sci-chemistry/autodock/autodock-4.2.3-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild?rev=1.4&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild?rev=1.4&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild?r1=1.3&r2=1.4 Index: autodock-4.2.3-r1.ebuild =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- autodock-4.2.3-r1.ebuild 26 Jun 2011 09:00:41 -0000 1.3 +++ autodock-4.2.3-r1.ebuild 13 Mar 2015 11:04:23 -0000 1.4 @@ -1,6 +1,6 @@ -# Copyright 1999-2011 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild,v 1.3 2011/06/26 09:00:41 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild,v 1.4 2015/03/13 11:04:23 jlec Exp $ EAPI=3 1.10 sci-chemistry/autodock/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?rev=1.10&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?rev=1.10&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/ChangeLog?r1=1.9&r2=1.10 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v retrieving revision 1.9 retrieving revision 1.10 diff -u -r1.9 -r1.10 --- ChangeLog 26 Jun 2011 09:00:41 -0000 1.9 +++ ChangeLog 13 Mar 2015 11:04:23 -0000 1.10 @@ -1,6 +1,13 @@ # ChangeLog for sci-chemistry/autodock -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.9 2011/06/26 09:00:41 jlec Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.10 2015/03/13 11:04:23 jlec Exp $ + +*autodock-4.2.6 (13 Mar 2015) + + 13 Mar 2015; Justin Lecher <[email protected]> +autodock-4.2.6.ebuild, + +files/autodock-4.2.6-buildsystem.patch, autodock-4.2.3-r1.ebuild, + metadata.xml: + Version Bump; Move to new python eclasses 26 Jun 2011; Justin Lecher <[email protected]> autodock-4.2.3-r1.ebuild: Straight out QA issues @@ -41,4 +48,3 @@ +autodock-4.0.1.ebuild: Initial import. Thanks to Luc Grenier <[email protected]> for his ebuild and for testing the package. - 1.1 sci-chemistry/autodock/autodock-4.2.6.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.6.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/autodock/autodock-4.2.6.ebuild?rev=1.1&content-type=text/plain Index: autodock-4.2.6.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.6.ebuild,v 1.1 2015/03/13 11:04:23 jlec Exp $ EAPI=5 PYTHON_COMPAT=( python2_7 ) inherit autotools eutils python-any-r1 versionator MY_PN="autodocksuite" MY_P="${MY_PN}-${PV}" DESCRIPTION="A suite of automated docking tools" HOMEPAGE="http://autodock.scripps.edu/"; SRC_URI="http://autodock.scripps.edu/downloads/autodock-registration/tars/dist$(delete_all_version_separators)/${MY_P}-src.tar.gz" LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="examples openmp test" RDEPEND="" DEPEND="test? ( ${PYTHON_DEPS} )" S="${WORKDIR}/src" PATCHES=( "${FILESDIR}"/${P}-buildsystem.patch ) src_prepare() { local i epatch ${PATCHES[@]} sed \ -e "s/\tcsh/\tsh/" \ -i auto{dock,grid}/Makefile.am || die for i in autodock autogrid; do pushd $i &>/dev/null eautoreconf popd &>/dev/null done } src_configure() { local i for i in autodock autogrid; do pushd $i &>/dev/null econf $(use_enable openmp) popd &>/dev/null done } src_compile() { emake -C autodock emake -C autogrid } src_test() { elog "Testing autodock" cd "${S}/autodock/Tests" || die cp ../*.dat . || die ${EPYTHON} test_autodock4.py || die "AutoDock tests failed." einfo "Testing autogrid" cd "${S}/autogrid/Tests" || die ${EPYTHON} test_autogrid4.py || die "AutoGrid tests failed." } src_install() { if use openmp; then newbin autodock/autodock4.omp ${PN}4 dobin autogrid/autogrid4 else dobin autodock/autodock4 autogrid/autogrid4 fi insinto /usr/share/${PN} doins -r \ autodock/{AD4_parameters.dat,AD4_PARM99.dat} \ $(usex examples "autodoc/EXAMPLES" "") DOCS=( RELEASENOTES autodock/{AUTHORS,README} autodock/USERGUIDES/AutoDock4.{0,1,2}_UserGuide.doc autodock/USERGUIDES/AutoDock4.2_UserGuide.pdf ) einstalldocs } pkg_postinst() { elog "The AutoDock development team requests all users to fill out the" elog "registration form at:" echo elog "\thttp://autodock.scripps.edu/downloads/autodock-registration"; echo elog "The number of unique users of AutoDock is used by Prof. Arthur J." elog "Olson and the Scripps Research Institude to support grant" elog "applications." }
