commit:     203d57887f27309969202417619e1fe871b6cca8
Author:     Nicolas PARLANT <nicolas.parlant <AT> parhuet <DOT> fr>
AuthorDate: Thu Mar 13 15:04:20 2025 +0000
Commit:     Sam James <sam <AT> gentoo <DOT> org>
CommitDate: Mon Mar 24 09:15:54 2025 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=203d5788

sci-chemistry/openbabel: add 3.1.1_p20241221

New snapshot to include in particular more json features.

deps :
  libxml2/cairo are not required with minimal
  rm openbabel-perl

replace sed :
  perl LIB_INSTALL_DIR (no-op) -> set PERL_INSTDIR
  PYTHON_BINDINGS (no-op for test/CMakeLists.txt due to a typo) -> not required
  examples RUNTIME_DESTINATION -> patch with CMAKE_INSTALL_DOCDIR
  find_package :
     use DISABLE_FIND_PACKAGE for Cairo(png), wxWidgets(wxwidgets) and Boost
     use ADD_INCHI_FORMAT to prevent using bundled inchi

openbabel-python-cmake :
  use target_include_directories instead of include_directories to prevent
  including all python_targets at the same time for each implementation.

tests :
  skip two more tests with known issues
  rm -O2 exclusions introduced with 1fce6e91e642ac7fe5c3b9f675c54244be423a53
  It seems fixed now (checked with -O2/clang/lto/gcc15/+-openmp/+-cpu_flags).
  This will require investigation if it reappears.

add py3.13 (tests passed)

Signed-off-by: Nicolas PARLANT <nicolas.parlant <AT> parhuet.fr>
Signed-off-by: Sam James <sam <AT> gentoo.org>

 sci-chemistry/openbabel/Manifest                   |   1 +
 .../files/openbabel-3.1.1_p2024-fix_examples.patch |  13 ++
 .../files/openbabel-3.1.1_p2024-fix_pybind.patch   |  25 +++
 .../openbabel/files/openbabel-python-r2.cmake      | 103 +++++++++
 .../openbabel/openbabel-3.1.1_p20241221.ebuild     | 236 +++++++++++++++++++++
 5 files changed, 378 insertions(+)

diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
index a9d177301beb..bb5b7ce68d7e 100644
--- a/sci-chemistry/openbabel/Manifest
+++ b/sci-chemistry/openbabel/Manifest
@@ -1,3 +1,4 @@
 DIST openbabel-3.1.1_p20210225.tar.gz 36674527 BLAKE2B 
bb82fc96f704249d211bd86c73de0cf4e7cfe5e2ba5c745aa8b4f6f19583837e2181d85101377810095f6b71fc3b91bf2f6f5636726fc8271c6905f1f8c59e7b
 SHA512 
9ff7cb4acbfad7a9c5c8d0dd8930ac0390d0d0f2758d1a6120009071f47ffe718f92ad620d37f26f196babb14649c52b5eb7bb161c342ef36aec655e0a172de4
+DIST openbabel-3.1.1_p20241221.tar.gz 36864825 BLAKE2B 
55e6fbdd5c50a557c40fd5ffaca41753f73175b2b4eea22abe5c2b0031363e3c133acf9a8daf5b1cb362a3adb6398204497af036b9a7ba3630c1d8ccbce0f9d3
 SHA512 
44340c3d08b22783cf6a702c192480869b73fef21104641feaf5cbcd51f693fd17bb05ad31a3520f330aa57733d6f4be707b3c1243b3010d6ceccca8974e732f
 DIST openbabel.jpg 12159 BLAKE2B 
b701df2b8c29df607dc2bd3997a282aa9a726d56c789ff2db900d33234dc691f76b6af12a4c9ccda4f09984504b863c40c39e8bf91058939996714ede2dd37c7
 SHA512 
998ea526c8c92f87dd203527fdd9f4e001357e951409209f41ab68e0b730fe12d97f9079c12ca289be413854ea2abcf8bb691ae5af823a6f29d6a590e1a3e2b0
 DIST openbabel.png 29060 BLAKE2B 
8d217d92125cc73462437411dd4e0cc05179cb0934f5ed15a307acc6b549b8ebab250a48a05ef7657f48c6df394f37da9b659de61efb1477b79b573a5b393ad3
 SHA512 
bbcaaa37663b526c9038ccb9edaf05ccc3ad1a861739a737f05f363098d8402a10b36e341fcc0aca636e809c6c32db99bf987b41719a0c756bf5e31444d3eb70

diff --git 
a/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_examples.patch 
b/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_examples.patch
new file mode 100644
index 000000000000..b61d3bc29b98
--- /dev/null
+++ b/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_examples.patch
@@ -0,0 +1,13 @@
+prevent installation of examples in /usr/bin
+all files from examples are 'RUNTIME', no lib
+--- a/doc/examples/CMakeLists.txt
++++ b/doc/examples/CMakeLists.txt
+@@ -7,7 +7,7 @@
+   add_executable(${example} ${example}.cpp)
+   target_link_libraries(${example} ${BABEL_LIBRARY})
+   install(TARGETS ${example}
+-    RUNTIME DESTINATION bin
++    RUNTIME DESTINATION ${CMAKE_INSTALL_DOCDIR}/examples
+     LIBRARY DESTINATION lib
+     ARCHIVE DESTINATION lib
+   )

diff --git 
a/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_pybind.patch 
b/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_pybind.patch
new file mode 100644
index 000000000000..ab1a24499306
--- /dev/null
+++ b/sci-chemistry/openbabel/files/openbabel-3.1.1_p2024-fix_pybind.patch
@@ -0,0 +1,25 @@
+--- a/scripts/CMakeLists.txt
++++ b/scripts/CMakeLists.txt
+@@ -69,13 +69,9 @@
+ 
+ if (DO_PYTHON_BINDINGS)
+ 
+-    include_directories(
+-        ${PYTHON_INCLUDE_PATH}
+-    )
+-
+     if(RUN_SWIG)
+       add_custom_command(OUTPUT 
${openbabel_SOURCE_DIR}/scripts/python/openbabel/openbabel-python.cpp 
${openbabel_SOURCE_DIR}/scripts/python/openbabel/openbabel.py
+-      COMMAND ${SWIG_EXECUTABLE} -python -c++ ${doxygen_switch} -small -O 
-templatereduce -naturalvar -I${openbabel_SOURCE_DIR}/include 
-I${openbabel_BINARY_DIR}/include -o 
${openbabel_SOURCE_DIR}/scripts/python/openbabel/openbabel-python.cpp 
${eigen_define} -outdir ${openbabel_SOURCE_DIR}/scripts/python/openbabel 
${openbabel_SOURCE_DIR}/scripts/openbabel-python.i
++            COMMAND ${SWIG_EXECUTABLE} -python -c++ ${doxygen_switch} -small 
-O -templatereduce -naturalvar -I${PYTHON_INCLUDE_PATH} 
-I${openbabel_SOURCE_DIR}/include -I${openbabel_BINARY_DIR}/include -o 
${openbabel_SOURCE_DIR}/scripts/python/openbabel/openbabel-python.cpp 
${eigen_define} -outdir ${openbabel_SOURCE_DIR}/scripts/python/openbabel 
${openbabel_SOURCE_DIR}/scripts/openbabel-python.i
+               MAIN_DEPENDENCY openbabel-python.i
+               VERBATIM
+               )
+@@ -84,6 +80,7 @@
+     
configure_file(${openbabel_SOURCE_DIR}/scripts/python/openbabel/__init__.py.in
+                    
${openbabel_SOURCE_DIR}/scripts/python/openbabel/__init__.py)
+     add_library(bindings_python MODULE 
${openbabel_SOURCE_DIR}/scripts/python/openbabel/openbabel-python.cpp)
++    target_include_directories(bindings_python PRIVATE ${PYTHON_INCLUDE_PATH})
+ 
+     if(APPLE)
+       # Don't link against Python library on Mac

diff --git a/sci-chemistry/openbabel/files/openbabel-python-r2.cmake 
b/sci-chemistry/openbabel/files/openbabel-python-r2.cmake
new file mode 100644
index 000000000000..a16970deb0b1
--- /dev/null
+++ b/sci-chemistry/openbabel/files/openbabel-python-r2.cmake
@@ -0,0 +1,103 @@
+# The following is a cmake fragment taken from scripts/CMakeLists.txt and
+# edited for Gentoo python multibuild compatibility.
+
+if (DO_PYTHON_BINDINGS)
+       # Tags should be edited to reflect the active python implementation
+       set(EPYTHON @@EPYTHON@@)
+       set(PYTHON_INCLUDE_DIR @@PYTHON_INCLUDE_DIR@@)
+       set(PYTHON_LIBS @@PYTHON_LIBS@@)
+       set(PYTHON_SITEDIR @@PYTHON_SITEDIR@@)
+
+       add_custom_command(
+               OUTPUT 
${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp 
${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
+               COMMAND ${SWIG_EXECUTABLE} -python -c++ -small -O 
-templatereduce -naturalvar -I${PYTHON_INCLUDE_DIR} 
-I${CMAKE_SOURCE_DIR}/include -I${CMAKE_BINARY_DIR}/include -o 
${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp ${eigen_define} 
-outdir ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON} 
${CMAKE_SOURCE_DIR}/scripts/openbabel-python.i
+               MAIN_DEPENDENCY openbabel-python.i
+               VERBATIM
+       )
+
+       
configure_file(${CMAKE_SOURCE_DIR}/scripts/python/openbabel/__init__.py.in
+               ${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py)
+
+       add_library(bindings_python_${EPYTHON} MODULE 
${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel-python.cpp)
+       target_include_directories(bindings_python_${EPYTHON} PRIVATE 
${PYTHON_INCLUDE_DIR})
+       target_link_libraries(bindings_python_${EPYTHON} ${PYTHON_LIBS} 
${BABEL_LIBRARY})
+
+       set_target_properties(bindings_python_${EPYTHON}
+               PROPERTIES
+               OUTPUT_NAME _openbabel
+               LIBRARY_OUTPUT_DIRECTORY 
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel
+               PREFIX ""
+               SUFFIX .so )
+
+       add_dependencies(bindings_python_${EPYTHON} openbabel)
+
+       install(TARGETS bindings_python_${EPYTHON}
+               LIBRARY DESTINATION ${PYTHON_SITEDIR}/openbabel
+               COMPONENT bindings_python)
+       install(FILES 
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/__init__.py
+               DESTINATION ${PYTHON_SITEDIR}/openbabel
+               COMPONENT bindings_python)
+       install(FILES ${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py
+               DESTINATION ${PYTHON_SITEDIR}/openbabel
+               COMPONENT bindings_python)
+       install(FILES ${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py
+               DESTINATION ${PYTHON_SITEDIR}/openbabel
+               COMPONENT bindings_python)
+
+       if (ENABLE_TESTS)
+               # Make sure all module files are together in the same directory 
for testing
+               add_custom_command(TARGET bindings_python_${EPYTHON} POST_BUILD
+                       COMMAND ${CMAKE_COMMAND} -E copy 
${CMAKE_SOURCE_DIR}/scripts/${EPYTHON}/openbabel.py 
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/
+                       COMMAND ${CMAKE_COMMAND} -E copy 
${CMAKE_SOURCE_DIR}/scripts/python/openbabel/pybel.py 
${CMAKE_BINARY_DIR}/scripts/${EPYTHON}/openbabel/)
+               set(TEST_SOURCE_DIR ${CMAKE_SOURCE_DIR}/test)
+               # define TESTDATADIR for tests that need input files
+               add_definitions(-DTESTDATADIR="${TEST_SOURCE_DIR}/files/")
+               # define FORMATDIR for location of format plugin binaries
+               set(FORMATDIR "${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/")
+               add_definitions(-DFORMATDIR="${FORMATDIR}/")
+               include_directories(${TEST_SOURCE_DIR})
+
+               # The macro is modified from cmake/modules/UsePythonTest.cmake
+               MACRO(ADD_PYTHON_TEST TESTNAME FILENAME)
+                       GET_SOURCE_FILE_PROPERTY(loc ${FILENAME} LOCATION)
+                       STRING(REGEX REPLACE ";" " " wo_semicolumn "${ARGN}")
+                       FILE(WRITE ${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake
+"
+       MESSAGE(\"${PYTHONPATH}\")
+       EXECUTE_PROCESS(
+               COMMAND ${EPYTHON} ${loc} ${wo_semicolumn}
+               RESULT_VARIABLE import_res
+               OUTPUT_VARIABLE import_output
+               ERROR_VARIABLE  import_output
+       )
+
+       # Pass the output back to ctest
+       IF(import_output)
+               MESSAGE(\${import_output})
+       ENDIF(import_output)
+       IF(import_res)
+               MESSAGE(SEND_ERROR \${import_res})
+       ENDIF(import_res)
+"
+                       )
+                       ADD_TEST(${TESTNAME} ${CMAKE_COMMAND} -P 
${CMAKE_BINARY_DIR}/test/${TESTNAME}.cmake)
+               ENDMACRO(ADD_PYTHON_TEST)
+
+               set(pybindtests
+                       bindings
+                       _pybel
+                       example 
+                       obconv_writers
+                       cdjsonformat
+                       pcjsonformat
+                       roundtrip
+                       )
+               foreach(pybindtest ${pybindtests})
+                       ADD_PYTHON_TEST(pybindtest_${pybindtest}_${EPYTHON} 
${TEST_SOURCE_DIR}/test${pybindtest}.py)
+                       
set_tests_properties(pybindtest_${pybindtest}_${EPYTHON} PROPERTIES
+                               ENVIRONMENT 
"PYTHONPATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX};LD_LIBRARY_PATH=${CMAKE_BINARY_DIR}/scripts/${EPYTHON}:${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}:\$ENV{LD_LIBRARY_PATH};BABEL_LIBDIR=${CMAKE_BINARY_DIR}/lib${LIB_SUFFIX}/;BABEL_DATADIR=${CMAKE_SOURCE_DIR}/data"
+                               FAIL_REGULAR_EXPRESSION "ERROR;FAIL;Test failed"
+                       )
+               endforeach(pybindtest ${pybindtests})
+       endif (ENABLE_TESTS)
+endif(DO_PYTHON_BINDINGS)

diff --git a/sci-chemistry/openbabel/openbabel-3.1.1_p20241221.ebuild 
b/sci-chemistry/openbabel/openbabel-3.1.1_p20241221.ebuild
new file mode 100644
index 000000000000..84485db4537d
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-3.1.1_p20241221.ebuild
@@ -0,0 +1,236 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..13} )
+WX_GTK_VER=3.2-gtk3
+
+inherit cmake desktop flag-o-matic perl-functions python-r1 toolchain-funcs 
wxwidgets xdg
+
+DESCRIPTION="Interconverts file formats used in molecular modeling"
+HOMEPAGE="https://openbabel.org/ https://github.com/openbabel/openbabel/";
+
+if [[ "${PV}" == *9999* ]]; then
+       inherit git-r3
+       EGIT_REPO_URI="https://github.com/openbabel/${PN}.git";
+else
+       if [[ "${PV}" == *_p* ]]; then  # eg., openbabel-3.1.1_p20210325
+               # Set to commit hash
+               OPENBABEL_COMMIT="889c350feb179b43aa43985799910149d4eaa2bc"
+               
SRC_URI="https://github.com/${PN}/${PN}/archive/${OPENBABEL_COMMIT}.tar.gz -> 
${P}.tar.gz"
+               S="${WORKDIR}/${PN}-${OPENBABEL_COMMIT}"
+       else
+               MY_P="${PN}-$(ver_rs 1- -)"
+               SRC_URI="https://github.com/${PN}/${PN}/archive/${MY_P}.tar.gz 
-> ${P}.tar.gz"
+               S="${WORKDIR}/${PN}-${MY_P}"
+       fi
+       KEYWORDS="~amd64 ~arm ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
+fi
+
+LICENSE="GPL-2"
+# See src/CMakeLists.txt for LIBRARY_VERSION
+SLOT="0/7.0.0"
+IUSE="cpu_flags_arm_neon cpu_flags_x86_sse2 cpu_flags_x86_sse4_2 doc examples 
+inchi json minimal openmp perl png python test wxwidgets"
+RESTRICT="!test? ( test )"
+REQUIRED_USE="
+       python? ( ${PYTHON_REQUIRED_USE} )
+       test? ( inchi !minimal python? ( json png ) ${PYTHON_REQUIRED_USE} )
+"
+
+RDEPEND="
+       dev-cpp/eigen:3
+       sys-libs/zlib:=
+       inchi? ( sci-libs/inchi )
+       json? ( >=dev-libs/rapidjson-1.1.0 )
+       !minimal? (
+               dev-libs/libxml2:2
+               png? ( x11-libs/cairo )
+       )
+       perl? ( dev-lang/perl:= )
+       python? ( ${PYTHON_DEPS} )
+       wxwidgets? ( x11-libs/wxGTK:${WX_GTK_VER}[X] )
+"
+DEPEND="${RDEPEND}"
+BDEPEND="
+       dev-lang/perl
+       doc? (
+               app-text/doxygen
+               dev-texlive/texlive-latex
+       )
+       perl? ( dev-lang/swig )
+       python? ( dev-lang/swig )
+       test? ( dev-lang/python )
+"
+
+PATCHES=(
+       # Set include dir only for global implementation
+       "${FILESDIR}"/${PN}-3.1.1_p2024-fix_pybind.patch
+       # prevent installation of examples in /usr/bin
+       "${FILESDIR}"/${PN}-3.1.1_p2024-fix_examples.patch
+)
+
+pkg_pretend() {
+       [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+       [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+gen_python_bindings() {
+       mkdir -p scripts/${EPYTHON} || die
+       # Appends to scripts/CMakeLists.txt, substituting the correct tags, for
+       # each valid python implementation,
+       cat "${FILESDIR}"/${PN}-python-r2.cmake | \
+               sed -e "s|@@EPYTHON@@|${EPYTHON}|" \
+                       -e "s|@@PYTHON_INCLUDE_DIR@@|$(python_get_includedir)|" 
\
+                       -e "s|@@PYTHON_LIBS@@|$(python_get_LIBS)|" \
+                       -e "s|@@PYTHON_SITEDIR@@|$(python_get_sitedir)|" >> \
+                               scripts/CMakeLists.txt || die
+}
+
+src_prepare() {
+       cmake_src_prepare
+
+       # Prevent bundled inchi as fallback
+       rm -r include/inchi || die
+
+       use python && python_foreach_impl gen_python_bindings
+}
+
+src_configure() {
+       if use json; then
+               # -DOPTIMIZE_NATIVE=ON also forces -march=native so use
+               # cpu_flags to set defines instead
+               use cpu_flags_x86_sse2 && append-cppflags -DRAPIDJSON_SSE2
+               use cpu_flags_x86_sse4_2 && append-cppflags -DRAPIDJSON_SSE42
+               use cpu_flags_arm_neon && append-cppflags -DRAPIDJSON_NEON
+       fi
+
+       use wxwidgets && setup-wxwidgets
+
+       use_bindings() {
+               (use perl || use python) && (echo 'yes' || die) || (echo 'no' 
|| die)
+       }
+
+       local mycmakeargs=(
+               $(cmake_use_find_package png Cairo)
+               $(cmake_use_find_package wxwidgets wxWidgets)
+               -DCMAKE_SKIP_RPATH=ON
+               -DBUILD_DOCS=$(usex doc)
+               -DBUILD_EXAMPLES=$(usex examples)
+               -DBUILD_GUI=$(usex wxwidgets)
+               -DENABLE_OPENMP=$(usex openmp)
+               -DENABLE_TESTS=$(usex test)
+               -DMINIMAL_BUILD=$(usex minimal)
+               # All three required to comply w/ useflag and prevent bundled 
lib
+               -DOPENBABEL_USE_SYSTEM_INCHI=$(usex inchi)
+               -DADD_INCHI_FORMAT=$(usex inchi)
+               -DWITH_INCHI=$(usex inchi)
+               -DOPTIMIZE_NATIVE=OFF
+               -DPERL_BINDINGS=$(usex perl)
+               -DPYTHON_BINDINGS=$(usex python)
+               -DRUN_SWIG=$(use_bindings)
+               -DWITH_COORDGEN=false
+               -DWITH_JSON=$(usex json)
+               # MEAPARSER
+               -DCMAKE_DISABLE_FIND_PACKAGE_Boost=ON
+               -DWITH_MAEPARSER=false
+       )
+
+       if use perl; then
+               perl_set_version
+               mycmakeargs+=(
+                       -DPERL_INSTDIR="${VENDOR_ARCH}"
+               )
+       fi
+
+       if use test; then
+               # Help cmake find the python interpreter when 
dev-lang/python-exec is built
+               # without native-symlinks support.
+               python_setup
+               mycmakeargs+=(
+                       -DPYTHON_EXECUTABLE="${PYTHON}"
+               )
+       fi
+
+       cmake_src_configure
+}
+
+src_test() {
+       local CMAKE_SKIP_TESTS=(
+               # https://github.com/openbabel/openbabel/issues/2766
+               test_align_{4,5}
+       )
+       ! use wxwidgets && CMAKE_SKIP_TESTS+=(
+               test_tautomer_{22,27}
+       )
+
+       # Weird deadlock causes system_load to keep rising
+       cmake_src_test -j1
+}
+
+openbabel-optimize() {
+       python_optimize "${D}/$(python_get_sitedir)"/openbabel || die
+}
+
+src_install() {
+       cmake_src_install
+
+       docinto html
+       for x in doc/*.html; do
+               [[ ${x} != doc/api*.html ]] && dodoc ${x}
+       done
+
+       if use doc; then
+               cmake_src_install docs
+               docinto html/API
+               dodoc -r doc/API/html/.
+       fi
+
+       if use examples; then
+               # no compression since we want ready-to-run scripts
+               docompress -x /usr/share/doc/${PF}/examples
+
+               # ${PV} doesn't correspond to the internal BABEL_VERSION for
+               # live or patch release builds so we grep it
+               local babel_ver=$(
+                       grep '^#define BABEL_VERSION' < \
+                               "${BUILD_DIR}"/include/openbabel/babelconfig.h 
| \
+                               cut -d \" -f 2 || die
+               )
+               docinto examples/povray
+               dodoc doc/dioxin.* doc/README*.pov*
+               # Needed by the povray example
+               dosym ../../../../${PN}/${babel_ver}/babel_povray3.inc \
+                       /usr/share/doc/${PF}/examples/povray/babel31.inc
+       fi
+
+       if use perl; then
+               docinto /
+               newdoc scripts/perl/Changes Changes.perl
+               newdoc scripts/perl/README README.perl
+               if use examples; then
+                       docinto examples/perl
+                       dodoc -r scripts/perl/examples/.
+               fi
+       fi
+
+       if use python; then
+               python_foreach_impl openbabel-optimize
+               docinto /
+               newdoc scripts/python/README.rst README.python.rst
+               docinto html
+               dodoc scripts/python/*.html
+               if use examples; then
+                       docinto examples/python
+                       dodoc -r scripts/python/examples/.
+               fi
+       fi
+
+       if use wxwidgets; then
+               make_desktop_entry obgui "Open Babel" ${PN}
+               newicon "${S}"/src/GUI/babel.xpm ${PN}.xpm
+       fi
+}

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