commit: 5e8b05423a6682406c10fd56aa7262b0b75d4101 Author: Pacho Ramos <pacho <AT> gentoo <DOT> org> AuthorDate: Wed Mar 5 17:03:35 2025 +0000 Commit: Pacho Ramos <pacho <AT> gentoo <DOT> org> CommitDate: Wed Mar 5 18:12:04 2025 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e8b0542
sci-chemistry/dssp: add 4.4.11 Signed-off-by: Pacho Ramos <pacho <AT> gentoo.org> sci-chemistry/dssp/Manifest | 1 + sci-chemistry/dssp/dssp-4.4.11.ebuild | 55 +++++++++++++++++++++++++++++++++++ 2 files changed, 56 insertions(+) diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest index 25a5ff93dd17..5483a463dfec 100644 --- a/sci-chemistry/dssp/Manifest +++ b/sci-chemistry/dssp/Manifest @@ -1,3 +1,4 @@ DIST dssp-2.2.1.tgz 47141 BLAKE2B 34d8b2db8797a8c23763766c0214337f03584c4be52c1bc820a0df0db6a5f78ac0229aafdd47a60b8fd6f4832abf0399663c53f9e898c75f08ecbe22b141c8da SHA512 4a273714d6b3230daea166caa7f4117d5ccb225bea0cf1bc2eb61539b6cc8e227d0ba19047d61f0ad0d1d6bc2efdec9c193bd44341e15ef0950acb4a22498811 DIST dssp-3.0.11.tar.gz 168085 BLAKE2B e1c42fd22cfb2287f10b5deae48b56a4583d4a67737a3485dcbd160d1597a15c2d5105c3794c875d8001abede1c014efb4f7f5b7c250f867bdf9ed95a0860217 SHA512 a0cfe44e517ff1f909ef2928b62ae2c639c6bddfd8a0fb538883f647fd2771e00da68e0fd2521aa02ba3c6d1b0c9b784b7fe142392af3a3abf6ea89f1546bd9d DIST dssp-4.4.10.tar.gz 164259 BLAKE2B 5d82ce25779060f89b50742683102aea53984fca10e54aa3cd0b21c7be3684336f6561928282e40300bb164c5b881797fababa5175c139f5b304a952f21db661 SHA512 1bdbdd4b058801d78cc28dcb23478656dfb322ce81f4fe8ede2cd72640778084ce8c99aff367aff53c26ad221ffa6ebafcf9730005b1a873957d26eb42f724c8 +DIST dssp-4.4.11.tar.gz 163930 BLAKE2B 00da516faeac6f49a6b2b82d69c6e92a53531e2a0cf98718e7fa78f848b060b9f2d68f255e958842ff748119f7f3de2a06e5d6fffd4c1787485a81562185ffb7 SHA512 3abe6d6f5578714358c551bc4d4426c5359f68329058deb50fe4f643e4b380e7fa41de7aeb9d016211d69b72c7d892c17d5268b34b65c1566ff33ae978ee6f9b diff --git a/sci-chemistry/dssp/dssp-4.4.11.ebuild b/sci-chemistry/dssp/dssp-4.4.11.ebuild new file mode 100644 index 000000000000..3310702d334e --- /dev/null +++ b/sci-chemistry/dssp/dssp-4.4.11.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 +inherit cmake + +DESCRIPTION="The protein secondary structure standard" +HOMEPAGE="https://swift.cmbi.umcn.nl/gv/dssp/ https://github.com/PDB-REDO/dssp"; +SRC_URI="https://github.com/PDB-REDO/${PN}/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +# doc disabled as it only generates a PDF from the manpage for now +# https://github.com/PDB-REDO/dssp/issues/64 +#IUSE="doc" + +CDEPEND=" + dev-libs/boost:=[zlib] + >=dev-libs/libmcfp-1.3.5 + >=sci-libs/libcifpp-7.0.3 +" +BDEPEND="${CDEPEND} + dev-cpp/catch:0 +" +# doc? ( +# || ( app-text/pandoc-bin[pandoc-symlink] app-text/pandoc ) +# dev-python/weasyprint +# ) +RDEPEND="${CDEPEND}" + +#src_prepare() { +# # wkhtmltopdf is not available on Gentoo +# sed -i -e \ +# 's/-t html/-t html --pdf-engine=weasyprint/' \ +# CMakeLists.txt +# cmake_src_prepare +#} + +src_configure() { + local mycmakeargs=( + #-DBUILD_DOCUMENTATION=$(usex doc) + -DBUILD_DOCUMENTATION=NO + ) + cmake_src_configure +} + +pkg_postinst() { + if has_version "<=sci-chemistry/gromacs-2022"; then + ewarn "DSSP > 3.0.x is not compatible with gmx do_dssp:" + ewarn "https://gitlab.com/gromacs/gromacs/-/issues/4129"; + ewarn + ewarn "Feel free to mask newer versions if needed." + fi +}
