commit: e4ada608391fa674bcfed416af096775701633f3 Author: Michael Schubert <mschu.dev <AT> gmail <DOT> com> AuthorDate: Sun Jan 26 15:50:33 2025 +0000 Commit: Nowa Ammerlaan <nowa <AT> gentoo <DOT> org> CommitDate: Thu Feb 6 12:50:39 2025 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e4ada608
dev-python/pyBigWig: version bump 0.3.24, add tests, remove outdated ebuilds Signed-off-by: Michael Schubert <mschu.dev <AT> gmail.com> Closes: https://github.com/gentoo/sci/pull/1318 Signed-off-by: Nowa Ammerlaan <nowa <AT> gentoo.org> dev-python/pyBigWig/pyBigWig-0.3.17.ebuild | 25 ---------------------- dev-python/pyBigWig/pyBigWig-0.3.18.ebuild | 25 ---------------------- dev-python/pyBigWig/pyBigWig-0.3.24.ebuild | 33 ++++++++++++++++++++++++++++++ dev-python/pyBigWig/pyBigWig-9999.ebuild | 25 ---------------------- 4 files changed, 33 insertions(+), 75 deletions(-) diff --git a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild deleted file mode 100644 index acaca2306..000000000 --- a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="quick access to and creation of bigWig files" -HOMEPAGE="https://github.com/dpryan79/pyBigWig"; - -if [[ ${PV} == 9999 ]] ; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"; -else - SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="MIT" -SLOT="0" - -DEPEND="sci-biology/libBigWig" -RDEPEND="${DEPEND}" diff --git a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild deleted file mode 100644 index acaca2306..000000000 --- a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="quick access to and creation of bigWig files" -HOMEPAGE="https://github.com/dpryan79/pyBigWig"; - -if [[ ${PV} == 9999 ]] ; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"; -else - SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="MIT" -SLOT="0" - -DEPEND="sci-biology/libBigWig" -RDEPEND="${DEPEND}" diff --git a/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild new file mode 100644 index 000000000..2b5bd449d --- /dev/null +++ b/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2025 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{10..12} ) +DISTUTILS_USE_PEP517=setuptools +DISTUTILS_EXT=1 +export SETUPTOOLS_SCM_PRETEND_VERSION=${PV} +inherit distutils-r1 + +DESCRIPTION="quick access to and creation of bigWig files" +HOMEPAGE="https://github.com/deeptools/pyBigWig"; +SRC_URI="https://github.com/deeptools/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +REPEND=" + sys-libs/zlib:0= + sci-biology/libBigWig +" +DEPEND="${RDEPEND}" + +distutils_enable_tests pytest + +python_test() { + local pysite="${BUILD_DIR}"/install/${EPREFIX}/usr/lib/${EPYTHON}/site-packages + ln -s "${S}"/pyBigWigTest/test.bigBed "${pysite}"/pyBigWigTest || die + ln -s "${S}"/pyBigWigTest/test.bw "${pysite}"/pyBigWigTest || die + epytest pyBigWigTest/test.py +} diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild deleted file mode 100644 index acaca2306..000000000 --- a/dev-python/pyBigWig/pyBigWig-9999.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{10..11} ) -DISTUTILS_USE_PEP517=setuptools -inherit distutils-r1 - -DESCRIPTION="quick access to and creation of bigWig files" -HOMEPAGE="https://github.com/dpryan79/pyBigWig"; - -if [[ ${PV} == 9999 ]] ; then - inherit git-r3 - EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"; -else - SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz" - KEYWORDS="~amd64 ~x86" -fi - -LICENSE="MIT" -SLOT="0" - -DEPEND="sci-biology/libBigWig" -RDEPEND="${DEPEND}"
