jlec 15/03/05 10:14:41 Modified: metadata.xml ChangeLog Added: cutg-160-r1.ebuild Log: Bump to EAPI=5 and host tarball instead of just mirror it (Portage version: 2.2.18/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.4 sci-biology/cutg/metadata.xml file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/metadata.xml?rev=1.4&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/metadata.xml?rev=1.4&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/metadata.xml?r1=1.3&r2=1.4 Index: metadata.xml =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/metadata.xml,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- metadata.xml 1 Sep 2009 20:54:10 -0000 1.3 +++ metadata.xml 5 Mar 2015 10:14:41 -0000 1.4 @@ -1,8 +1,8 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> <pkgmetadata> - <herd>sci-biology</herd> - <longdescription> + <herd>sci-biology</herd> + <longdescription> Codon usage tables maintained at the Kazusa DNA Research Institute. Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence 1.57 sci-biology/cutg/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.57&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.57&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/ChangeLog?r1=1.56&r2=1.57 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v retrieving revision 1.56 retrieving revision 1.57 diff -u -r1.56 -r1.57 --- ChangeLog 9 Aug 2011 15:36:17 -0000 1.56 +++ ChangeLog 5 Mar 2015 10:14:41 -0000 1.57 @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/cutg -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.56 2011/08/09 15:36:17 xarthisius Exp $ +# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.57 2015/03/05 10:14:41 jlec Exp $ + +*cutg-160-r1 (05 Mar 2015) + + 05 Mar 2015; Justin Lecher <[email protected]> +cutg-160-r1.ebuild, + metadata.xml: + Bump to EAPI=5 and host tarball instead of just mirror it 09 Aug 2011; Kacper Kowalik <[email protected]> cutg-151.ebuild, cutg-160.ebuild: @@ -231,4 +237,3 @@ cutg-141.0.ebuild, metadata.xml : Initial import. Ebuild submitted by Olivier Fisette <[email protected]>. Reference: Gentoo Bugzilla, bug #54322 - 1.1 sci-biology/cutg/cutg-160-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/cutg-160-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cutg/cutg-160-r1.ebuild?rev=1.1&content-type=text/plain Index: cutg-160-r1.ebuild =================================================================== # Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160-r1.ebuild,v 1.1 2015/03/05 10:14:41 jlec Exp $ EAPI=5 DESCRIPTION="Codon usage tables calculated from GenBank" HOMEPAGE="http://www.kazusa.or.jp/codon/"; SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"; SLOT="0" LICENSE="public-domain" # Minimal build keeps only the indexed files (if applicable) and the # documentation. The non-indexed database is not installed. IUSE="emboss minimal" KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" DEPEND="emboss? ( sci-biology/emboss )" RDEPEND="${DEPEND}" RESTRICT="binchecks strip" src_compile() { if use emboss; then mkdir CODONS || die ebegin "Indexing CUTG for usage with EMBOSS." EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \ "Indexing CUTG failed." eend fi } src_install() { local file if ! use minimal; then dodir /usr/share/${PN} mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \ "Installing raw CUTG database failed." fi if use emboss; then dodir /usr/share/EMBOSS/data/CODONS cd CODONS || die for file in *; do mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \ "Installing the EMBOSS-indexed database failed." done fi dodoc README CODON_LABEL SPSUM_LABEL }
