jlec 15/03/03 15:17:10 Added: bwa-0.7.12-Makefile.patch Log: Version BUmp; thanks Ted Tanberry (Portage version: 2.2.17/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Revision Changes Path 1.1 sci-biology/bwa/files/bwa-0.7.12-Makefile.patch file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/files/bwa-0.7.12-Makefile.patch?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/bwa/files/bwa-0.7.12-Makefile.patch?rev=1.1&content-type=text/plain Index: bwa-0.7.12-Makefile.patch =================================================================== --- Makefile +++ Makefile @@ -1,8 +1,8 @@ -CC= gcc +CC?= gcc #CC= clang --analyze -CFLAGS= -g -Wall -Wno-unused-function -O2 +CFLAGS?= -g -Wall -Wno-unused-function -O2 WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS -AR= ar +AR?= ar DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) LOBJS= utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o AOBJS= QSufSort.o bwt_gen.o bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \ @@ -26,10 +26,10 @@ all:$(PROG) bwa:libbwa.a $(AOBJS) main.o - $(CC) $(CFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) + $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) bwamem-lite:libbwa.a example.o - $(CC) $(CFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) + $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) libbwa.a:$(LOBJS) $(AR) -csru $@ $(LOBJS)
