commit: 534ae4eb830063aa768bca0cb6832159cec1d2d9 Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> AuthorDate: Thu Nov 21 08:13:09 2024 +0000 Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> CommitDate: Thu Nov 21 08:13:37 2024 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=534ae4eb
sci-chemistry/gromacs: Fix build with gcc-15 Closes: https://bugs.gentoo.org/937696 Closes: https://bugs.gentoo.org/939006 Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> sci-chemistry/gromacs/files/gromacs-gcc-15.patch | 36 ++++++++++++++++++++++++ sci-chemistry/gromacs/gromacs-2024.3.ebuild | 2 ++ sci-chemistry/gromacs/gromacs-2024.4.ebuild | 2 ++ sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild | 2 ++ 4 files changed, 42 insertions(+) diff --git a/sci-chemistry/gromacs/files/gromacs-gcc-15.patch b/sci-chemistry/gromacs/files/gromacs-gcc-15.patch new file mode 100644 index 000000000000..45ac82493bec --- /dev/null +++ b/sci-chemistry/gromacs/files/gromacs-gcc-15.patch @@ -0,0 +1,36 @@ +From 9dfaba553cb5aa0c0d689de1555a3bb45ae7dd3a Mon Sep 17 00:00:00 2001 +From: Alexey Shvetsov <[email protected]> +Date: Thu, 21 Nov 2024 10:56:17 +0300 +Subject: [PATCH] Fix build with gcc-15 +MIME-Version: 1.0 +Content-Type: text/plain; charset=UTF-8 +Content-Transfer-Encoding: 8bit + +Error is +energyhistory.h:89:5: error: ‘int64_t’ does not name a type + 89 | int64_t nsteps; //! The number of steps in the history + | ^~~~~~~ + +Ref: https://bugs.gentoo.org/939006 + +Signed-off-by: Alexey Shvetsov <[email protected]> +--- + src/gromacs/mdtypes/energyhistory.h | 2 ++ + 1 file changed, 2 insertions(+) + +diff --git a/src/gromacs/mdtypes/energyhistory.h b/src/gromacs/mdtypes/energyhistory.h +index 0c8fecfae7..f80d4c56b9 100644 +--- a/src/gromacs/mdtypes/energyhistory.h ++++ b/src/gromacs/mdtypes/energyhistory.h +@@ -47,6 +47,8 @@ + #ifndef GMX_MDLIB_ENERGYHISTORY_H + #define GMX_MDLIB_ENERGYHISTORY_H + ++#include <cstdint> ++ + #include <memory> + #include <vector> + +-- +2.45.2 + diff --git a/sci-chemistry/gromacs/gromacs-2024.3.ebuild b/sci-chemistry/gromacs/gromacs-2024.3.ebuild index 2101629ebc36..e1c0b648701c 100644 --- a/sci-chemistry/gromacs/gromacs-2024.3.ebuild +++ b/sci-chemistry/gromacs/gromacs-2024.3.ebuild @@ -92,6 +92,8 @@ DOCS=( AUTHORS README ) RESTRICT="!test? ( test )" +PATCHES=( "${FILESDIR}/${PN}-gcc-15.patch" ) + if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi diff --git a/sci-chemistry/gromacs/gromacs-2024.4.ebuild b/sci-chemistry/gromacs/gromacs-2024.4.ebuild index 2101629ebc36..e1c0b648701c 100644 --- a/sci-chemistry/gromacs/gromacs-2024.4.ebuild +++ b/sci-chemistry/gromacs/gromacs-2024.4.ebuild @@ -92,6 +92,8 @@ DOCS=( AUTHORS README ) RESTRICT="!test? ( test )" +PATCHES=( "${FILESDIR}/${PN}-gcc-15.patch" ) + if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi diff --git a/sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild b/sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild index 4382a7dba81e..aa6eab316c98 100644 --- a/sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild +++ b/sci-chemistry/gromacs/gromacs-2025.0_beta.ebuild @@ -95,6 +95,8 @@ DOCS=( AUTHORS README ) RESTRICT="!test? ( test )" +PATCHES=( "${FILESDIR}/${PN}-gcc-15.patch" ) + if [[ ${PV} != *9999 ]]; then S="${WORKDIR}/${PN}-${PV/_/-}" fi
