commit: ad11fbbfa39a988c9f85a2fa7278ab8ad0e25a4b Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Mar 28 14:30:53 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Mar 28 14:30:53 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ad11fbbf
sci-biology/RADtools: new package Package-Manager: portage-2.2.7 --- sci-biology/RADtools/ChangeLog | 10 ++++++++ sci-biology/RADtools/RADtools-1.2.4.ebuild | 37 ++++++++++++++++++++++++++++++ sci-biology/RADtools/RADtools-9999.ebuild | 37 ++++++++++++++++++++++++++++++ sci-biology/RADtools/metadata.xml | 9 ++++++++ 4 files changed, 93 insertions(+) diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog new file mode 100644 index 0000000..0da9d19 --- /dev/null +++ b/sci-biology/RADtools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/RADtools +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*RADtools-1.2.4 (28 Mar 2014) +*RADtools-9999 (28 Mar 2014) + + 28 Mar 2014; Martin Mokrejs <[email protected]> + +RADtools-1.2.4.ebuild, +RADtools-9999.ebuild, +metadata.xml: + sci-biology/RADtools: new package diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild new file mode 100644 index 0000000..fe4587c --- /dev/null +++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" +HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"; + +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="git://github.com/johnomics/RADtools.git" + KEYWORDS="" +else + SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz + https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"; + KEYWORDS="~amd64" + S="${WORKDIR}" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-lang/perl-5.10 + dev-perl/Parallel-ForkManager" +RDEPEND="${DEPEND}" + +src_install() { + dobin RADMIDs RADmarkers RADpools RADtags + mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README" + perl-module_src_install DESTDIR="${D}" # install RADtools.pm into @INC path +} + diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild new file mode 100644 index 0000000..fe4587c --- /dev/null +++ b/sci-biology/RADtools/RADtools-9999.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" +HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home"; + +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="git://github.com/johnomics/RADtools.git" + KEYWORDS="" +else + SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz + https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf"; + KEYWORDS="~amd64" + S="${WORKDIR}" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-lang/perl-5.10 + dev-perl/Parallel-ForkManager" +RDEPEND="${DEPEND}" + +src_install() { + dobin RADMIDs RADmarkers RADpools RADtags + mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README" + perl-module_src_install DESTDIR="${D}" # install RADtools.pm into @INC path +} + diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml new file mode 100644 index 0000000..2bc8930 --- /dev/null +++ b/sci-biology/RADtools/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata>
