commit: 65c4d36d3d13f260278569bed39a4a7a467f3468 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sun Mar 23 18:19:37 2014 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sun Mar 23 18:19:37 2014 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=65c4d36d
sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from Package-Manager: portage-2.2.7 --- sci-biology/fastqc/ChangeLog | 5 +++++ sci-biology/fastqc/fastqc-0.10.1.ebuild | 3 ++- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog index 69015c4..53e3150 100644 --- a/sci-biology/fastqc/ChangeLog +++ b/sci-biology/fastqc/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 23 Mar 2014; Martin Mokrejs <[email protected]> + fastqc-0.10.1.ebuild: + sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming + from + *fastqc-0.10.1 (23 Mar 2014) 23 Mar 2014; Martin Mokrejs <[email protected]> diff --git a/sci-biology/fastqc/fastqc-0.10.1.ebuild b/sci-biology/fastqc/fastqc-0.10.1.ebuild index 5274554..14bd8ad 100644 --- a/sci-biology/fastqc/fastqc-0.10.1.ebuild +++ b/sci-biology/fastqc/fastqc-0.10.1.ebuild @@ -25,5 +25,6 @@ src_install(){ dobin fastqc # TODO: need to compile java in uk/ac/babraham/FastQC/ - # and decide whether jbzip2-0.9.jar and sam-1.32.jar are standard java libs and from samtools or whetehr not + # and decide whether jbzip2-0.9.jar is a standard java lib or not + # ignore the sam-1.32.jar, that is likely library already in sci-biology/picard }
