Is the "main" or "image" file geo-referenced ?
It may be that the .tif.msk mask files are assumed to be the same as
the matching .tif file.

yes, on creation of a .msk or .ovr, GDAL currently doesn't write any SRS or geotransform information into them. It could be appropriate however to do so. Someone may create an enhancement ticket about that.

Even

--
http://www.spatialys.com
My software is free, but my time generally not.

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