https://gcc.gnu.org/bugzilla/show_bug.cgi?id=80434
Bug ID: 80434
Summary: internal compiler error: Killed (program cc1plus)
Product: gcc
Version: 5.4.0
Status: UNCONFIRMED
Severity: normal
Priority: P3
Component: other
Assignee: unassigned at gcc dot gnu.org
Reporter: leclerc at ohsu dot edu
Target Milestone: ---
Hi Bug Fixer People:
I really have no idea what I'm doing, but apparently something you were not
expecting. Your instructions for not being an idiot when reporting bugs is
quite intimidating to a non-expert but the error message asked for me to
'please submit a full bug report' so here goes:
What we need
Please include in your bug report all of the following items, the
first three of which can be obtained from the output of gcc -v:
* the exact version of GCC;
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.4)
* the system type;
I don't know what of that stuff output from gcc -v tells me this so
this is what I know;
Ubuntu 16.04.4
R version 3.2.3
RStudio version: Version 1.0.136 – © 2009-2016 RStudio, Inc.
* the options given when GCC was configured/built;
not a clue, but I followed all the defaults cause I'm not good
enough to improvise
* the complete command line that triggers the bug;
> install.packages("dplyr")
* the compiler output (error messages, warnings, etc.); and
g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
make: *** [dplyr.o] Error 4
* the preprocessed file (*.i*) that triggers the bug, generated by
adding -save-temps to the complete compilation command, or, in
the case of a bug report for the GNAT front end, a complete set
of source files (see below).
I have no idea what you mean.
Probably altogether too much info, feel free to ingore this as well as the
whole report if it is crap:
In RStudio attempting to run something with libraries:
library("dplyr")
library("stringr")
needed to add the packages so,
in R Studio pushed install button,
in the dialog entered the package names,
In the console dplyr said it needed tibble, tibble couldn't find file Rcpp.h
back to R Studio package tab, install button, Rcpp, bunch of console
stuff happened, looked fine
(ok to be honest there was a lot of no rcpp package for
version...don't you mean Rcpp.. first)
so back to the package tab, install, dplyr
In console again said it would install tibble and dplyr
bunch of stuff in misc. colors I don't get, but then "Done (tibble)"
bunch more stuff ending in:
g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
make: *** [dplyr.o] Error 4
Output on console:
> install.packages("dplyr") -save -temps
Installing package into ‘/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2’
(as ‘lib’ is unspecified)
--2017-04-14 14:53:29--
https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 52.84.22.49
Connecting to cran.rstudio.com (cran.rstudio.com)|52.84.22.49|:443...
connected.
HTTP request sent, awaiting response... 200 OK
Length: 708476 (692K) [application/x-gzip]
Saving to: ‘/tmp/RtmpZUWuWp/downloaded_packages/dplyr_0.5.0.tar.gz’
0K .......... .......... .......... .......... .......... 7% 1.69M 0s
50K .......... .......... .......... .......... .......... 14% 3.37M 0s
100K .......... .......... .......... .......... .......... 21% 4.68M 0s
150K .......... .......... .......... .......... .......... 28% 4.04M 0s
200K .......... .......... .......... .......... .......... 36% 4.27M 0s
250K .......... .......... .......... .......... .......... 43% 3.63M 0s
300K .......... .......... .......... .......... .......... 50% 5.70M 0s
350K .......... .......... .......... .......... .......... 57% 1.92M 0s
400K .......... .......... .......... .......... .......... 65% 3.79M 0s
450K .......... .......... .......... .......... .......... 72% 4.87M 0s
500K .......... .......... .......... .......... .......... 79% 4.41M 0s
550K .......... .......... .......... .......... .......... 86% 4.63M 0s
600K .......... .......... .......... .......... .......... 93% 2.50M 0s
650K .......... .......... .......... .......... . 100% 4.61M=0.2s
2017-04-14 14:53:29 (3.42 MB/s) -
‘/tmp/RtmpZUWuWp/downloaded_packages/dplyr_0.5.0.tar.gz’ saved [708476/708476]
* installing *source* package ‘dplyr’ ...
** package ‘dplyr’ successfully unpacked and MD5 sums checked
** libs
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c address.cpp -o address.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c arrange.cpp -o arrange.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c between.cpp -o between.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c bind.cpp -o bind.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c combine_variables.cpp -o combine_variables.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c distinct.cpp -o distinct.o
g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/Rcpp/include"
-I"/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/BH/include"
-DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g
-O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -c dplyr.cpp -o dplyr.o
g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
/usr/lib/R/etc/Makeconf:143: recipe for target 'dplyr.o' failed
make: *** [dplyr.o] Error 4
ERROR: compilation failed for package ‘dplyr’
* removing ‘/home/leclerc/R/x86_64-pc-linux-gnu-library/3.2/dplyr’
Warning in install.packages :
installation of package ‘dplyr’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpZUWuWp/downloaded_packages’
Error in install.packages("dplyr") - save :
non-numeric argument to binary operator
