Check /var/log/dirsrv/slapd-EXAMPLE-COM/access for MOD and DEL
operations.

Also check /var/log/pki/pki-tomcat/ca/debug.YYYY-MM-DD.log for
activity if you happen to be impacted by buggy certmonger client(s)
that get stuck in a certificate renewal loop.

See 
https://lists.fedorahosted.org/archives/list/[email protected]/thread/RPP26VVE7OKAGHPRKMTLAHN2UOL653MC/

On Thu, 12 Dec 2024 10:14:36 -0500
"Brian J. Murrell via FreeIPA-users"
<[email protected]> wrote:

> Hi.
> 
> I am running FreeIPA on (fully up-to-date) EL8 and am experiencing
> really heavy constant writes to the (/var/lib/)dirsrv database disk:
> 
> 12:00:01 AM       tps     rkB/s     wkB/s     dkB/s   areq-sz    aqu-sz     
> await     %util DEV                                                           
>                          
> 01:00:01 AM    774.16    401.09   7371.63      0.00     10.04      0.78      
> 1.01     39.59 var_lib_dirsrv                                                 
>                         
> 02:00:00 AM    511.07      0.14   4896.57      0.00      9.58      0.51      
> 1.00     26.06 var_lib_dirsrv                                                 
>                         
> 03:00:00 AM    501.74      0.50   4807.00      0.00      9.58      0.50      
> 1.00     25.54 var_lib_dirsrv
> 04:00:00 AM    497.64      0.07   4771.83      0.00      9.59      0.50      
> 1.00     25.43 var_lib_dirsrv
> 05:00:00 AM    442.64      0.14   4241.13      0.00      9.58      0.44      
> 0.98     22.34 var_lib_dirsrv
> 06:00:00 AM    487.64      0.96   4676.10      0.00      9.59      0.48      
> 0.99     24.92 var_lib_dirsrv
> 07:00:00 AM    474.65      0.14   4558.98      0.00      9.61      0.48      
> 1.00     24.32 var_lib_dirsrv
> 08:00:00 AM    534.18      0.81   5137.36      0.00      9.62      0.54      
> 1.01     27.59 var_lib_dirsrv
> 09:00:00 AM    574.34      0.43   5537.93      0.00      9.64      0.58      
> 1.00     29.52 var_lib_dirsrv
> 10:00:00 AM    672.95      0.43   6501.68      0.00      9.66      0.67      
> 0.99     34.12 var_lib_dirsrv
> 11:00:00 AM    749.18      0.82   7250.97      0.00      9.68      0.75      
> 1.00     38.38 var_lib_dirsrv
> 12:00:00 PM    958.57      1.05   9296.95      0.00      9.70      0.95      
> 0.99     48.60 var_lib_dirsrv
> 01:00:00 PM   1003.80      0.80   9743.29      0.00      9.71      0.99      
> 0.99     51.09 var_lib_dirsrv
> 02:00:01 PM    567.52      1.34   5508.37      0.00      9.71      0.57      
> 1.01     29.40 var_lib_dirsrv
> 03:00:01 PM    514.13      0.16   5006.66      0.00      9.74      0.52      
> 1.01     26.71 var_lib_dirsrv
> 04:00:00 PM    515.12      0.34   5025.29      0.00      9.76      0.51      
> 1.00     26.49 var_lib_dirsrv
> 05:00:01 PM    514.74      0.03   5034.02      0.00      9.78      0.52      
> 1.00     26.56 var_lib_dirsrv
> 06:00:01 PM    490.61      0.04   4809.68      0.00      9.80      0.49      
> 1.00     25.29 var_lib_dirsrv
> 07:00:00 PM    513.17      0.02   5034.52      0.00      9.81      0.52      
> 1.00     26.81 var_lib_dirsrv
> 08:00:00 PM    506.14      0.00   4964.79      0.00      9.81      0.50      
> 1.00     25.99 var_lib_dirsrv
> 09:00:01 PM    503.88      0.05   4943.89      0.00      9.81      0.50      
> 1.00     25.89 var_lib_dirsrv                                                 
>                         
> 10:00:01 PM    509.54      0.02   5004.35      0.00      9.82      0.51      
> 1.00     26.35 var_lib_dirsrv                                                 
>                         
> 11:00:01 PM    498.23      0.02   4893.29      0.00      9.82      0.50      
> 1.00     25.78 var_lib_dirsrv                                                 
>                         
> Average:       578.94     17.80   5609.40      0.00      9.72      0.58      
> 1.00     29.68 var_lib_dirsrv                                                 
>                         
> 
> As you can see it's a pretty constant 5MB/s write bandwidth.  That disk
> is just the database, no log files, etc.  The files most frequently
> being written to are:
> 
> -rw-------. 1 dirsrv dirsrv   37347328 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/userRoot/id2entry.db
> -rw-------. 1 dirsrv dirsrv    2744320 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/userRoot/entryusn.db
> -rw-------. 1 dirsrv dirsrv    2646016 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/ipaca/id2entry.db
> -rw-------. 1 dirsrv dirsrv      16384 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/ipaca/entryusn.db
> -rw-------. 1 dirsrv dirsrv 1109262336 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv   14745600 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/__db.001
> -rw-------. 1 dirsrv dirsrv  104949064 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/__db.003
> -rw-------. 1 dirsrv dirsrv   10485760 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/log.0000005162
> -rw-------. 1 dirsrv dirsrv   57999360 Dec 12 09:54 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/db/__db.002
> 
> And the main database files themselves have just continually grown over
> time:
> 
> -rw-------. 1 dirsrv dirsrv  121634816 Aug 27  2022 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  144097280 Nov  3  2022 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  166150144 Dec  3  2022 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  174202880 Dec 17  2022 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  187965440 Jan 20  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  202571776 Feb 17  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  247570432 May 12  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  262955008 Jun 10  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  279224320 Jul  8  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  293167104 Aug  5  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  304029696 Aug 26  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  318144512 Sep 30  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  337469440 Nov  4  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  364732416 Dec  8  2023 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  396328960 Jan 12  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  410517504 Feb  8  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  418586624 Feb 22  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  456179712 Mar 15  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  485425152 Apr  7  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  562569216 May 28  2024 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  612147200 Aug 18 02:42 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  639762432 Aug 31 01:53 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  662282240 Sep  6 01:51 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  695541760 Sep 14 04:18 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  715882496 Sep 21 02:33 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  731496448 Sep 28 02:10 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  761552896 Oct 13 02:18 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  778076160 Oct 20 01:18 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  794820608 Oct 27 01:46 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  809304064 Nov  2 03:36 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  822583296 Nov  7 08:36 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  844079104 Nov 10 01:21 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  848076800 Nov 11 01:40 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  857710592 Nov 12 01:53 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  867352576 Nov 13 01:58 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  876568576 Nov 14 01:11 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  888070144 Nov 15 03:31 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  898465792 Nov 16 04:08 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  907616256 Nov 17 02:07 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  916480000 Nov 18 01:46 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  926220288 Nov 19 01:50 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  935952384 Nov 20 01:38 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  945872896 Nov 21 01:44 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  955441152 Nov 22 01:31 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  963747840 Nov 23 01:59 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  972324864 Nov 24 01:27 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  980189184 Nov 25 00:57 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  988086272 Nov 26 00:58 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv  995680256 Nov 27 01:26 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1003315200 Nov 28 01:25 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1010884608 Nov 29 01:53 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1021444096 Nov 30 01:47 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1027997696 Dec  1 01:58 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1036558336 Dec  2 02:10 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1068269568 Dec  6 03:23 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1073307648 Dec  7 01:33 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1082449920 Dec  8 11:02 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1088061440 Dec  9 09:06 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1092091904 Dec 10 01:01 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1098244096 Dec 11 00:50 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> -rw-------. 1 dirsrv dirsrv 1105944576 Dec 12 00:44 
> /var/lib/dirsrv/slapd-EXAMPLE-COM/cldb/1e5e4f8c-82ed11ec-88b1dfba-ae19c7b5_61e5b9dd000000040000.db
> 
> Should the directory server really need to sustain 5MB/s of write 24/7?
>  
> Should the database file(s) have this kind of constant growth model or
> is there some pruning that should be getting done?
> 
> Could these two issues be related?
> 
> Cheers,
> b.
> 

Attachment: pgpCcO2Cy5d1V.pgp
Description: OpenPGP digital signature

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