Hi,
We experienced the same where we now only see direct memberships.
During the wee hours of Dec 7. We saw a crash in our IPA server, running Centos 
7

(we're using nss-pam-ldapd on our hosts, which are running OEL7)
They've gotten indirect/nested memberships without any problems previously.

>From our yum logs we can see that the last few days we've got the following 
>updated packages:
Nov 22 05:24:29 Installed: kernel.x86_64 3.10.0-1160.80.1.el7
Nov 22 05:25:27 Updated: microcode_ctl.x86_64 2:2.1-73.15.el7_9
Dec 01 05:22:47 Updated: krb5-libs.x86_64 1.15.1-55.el7_9
Dec 01 05:22:47 Updated: libkadm5.x86_64 1.15.1-55.el7_9
Dec 01 05:22:47 Updated: krb5-workstation.x86_64 1.15.1-55.el7_9
Dec 01 05:22:47 Updated: krb5-devel.x86_64 1.15.1-55.el7_9
Dec 01 05:22:48 Updated: krb5-server.x86_64 1.15.1-55.el7_9
Dec 01 05:22:48 Updated: krb5-pkinit.x86_64 1.15.1-55.el7_9
Dec 01 05:22:50 Updated: tzdata.noarch 2022f-1.el7
Dec 01 05:22:50 Updated: hsqldb.noarch 1:1.8.1.3-15.el7_9
Dec 01 05:22:51 Updated: tzdata-java.noarch 2022f-1.el7
Dec 01 05:22:51 Updated: kpartx.x86_64 0.4.9-136.el7_9

We did see the Derectory Service being in a STOPPED state, on `ipactl start`
We get the following:

[root@ipa slapd-REDACTED-REDACTEDSOMEMORE]# ipactl start

IPA version error: data needs to be upgraded (expected version 
'4.6.8-5.el7.centos.12', current version '4.6.8-5.el7.centos.11')

Automatically running upgrade, for details see /var/log/ipaupgrade.log

Be patient, this may take a few minutes.

[76068899.913648] ns-slapd[6185]: segfault at 10 ip 00007f997c761460 sp 
00007f99886cc760 error 4 in libcos-plugin.so[7f997c75e000+a000]

Starting Directory Service

Starting krb5kdc Service

Starting kadmin Service

Starting named Service

Starting httpd Service

Starting ipa-custodia Service

Starting ntpd Service

Starting pki-tomcatd Service

Starting ipa-otpd Service

Starting ipa-dnskeysyncd Service

ipa: INFO: The ipactl command was successful
from the ipaupgrade.log

2022-12-07T03:07:58Z ERROR Introspect error on 
:1.25883111:/org/fedorahosted/certmonger: dbus.exceptions.DBusException: 
org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes 
include: the remote application did not send a reply, the message bus security 
policy blocked the reply, the reply timeout expired, or the network connection 
was broken.

2022-12-07T03:07:58Z DEBUG Executing introspect queue due to error

2022-12-07T03:08:23Z ERROR IPA server upgrade failed: Inspect 
/var/log/ipaupgrade.log and run command ipa-server-upgrade manually.

2022-12-07T03:08:23Z DEBUG   File 
"/usr/lib/python2.7/site-packages/ipapython/admintool.py", line 178, in execute

    return_value = self.run()

  File 
"/usr/lib/python2.7/site-packages/ipaserver/install/ipa_server_upgrade.py", 
line 54, in run

    server.upgrade()

  File "/usr/lib/python2.7/site-packages/ipaserver/install/server/upgrade.py", 
line 2190, in upgrade

    upgrade_configuration()

  File "/usr/lib/python2.7/site-packages/ipaserver/install/server/upgrade.py", 
line 1930, in upgrade_configuration

    http.configure_certmonger_renewal_guard()

  File "/usr/lib/python2.7/site-packages/ipaserver/install/httpinstance.py", 
line 335, in configure_certmonger_renewal_guard

    path = iface.find_ca_by_nickname('IPA')

  File "/usr/lib64/python2.7/site-packages/dbus/proxies.py", line 70, in 
__call__

    return self._proxy_method(*args, **keywords)

  File "/usr/lib64/python2.7/site-packages/dbus/proxies.py", line 145, in 
__call__

    **keywords)

  File "/usr/lib64/python2.7/site-packages/dbus/connection.py", line 651, in 
call_blocking

    message, timeout)



2022-12-07T03:08:23Z DEBUG The ipa-server-upgrade command failed, exception: 
DBusException: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. 
Possible causes include: the remote application did not send a reply, the 
message bus security policy blocked the reply, the reply timeout expired, or 
the network connection was broken.

2022-12-07T03:08:23Z ERROR Unexpected error - see /var/log/ipaupgrade.log for 
details:

DBusException: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. 
Possible causes include: the remote application did not send a reply, the 
message bus security policy blocked the reply, the reply timeout expired, or 
the network connection was broken.
And

2022-12-07T07:05:05Z DEBUG stderr=certutil: Could not find cert: ipaCert

: PR_FILE_NOT_FOUND_ERROR: File not found
The upgrade log can be provided if needed

Best Regards
Trond Strømme

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