The issue is created by sssd.
Instead of re-installing freeipa, I did the below work-around:

Temporarily backup /var/lib/sss/pubconf /var/lib/sss/pubconf_bkp

ssh again to the remote machine. This will update the new hostkey.

Move back /var/lib/sss/pubconf_bkp to /var/lib/sss/pubconf

Now try again. The issue will not recur.

Note: Don't forget to move back /var/lib/sss/pubconf, else LDAP authentication 
will fail

Regards,
Gautham
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