First of all thank you for taking time & replying. I thought "ipa-cacert-manage 
renew" is for renewing IPA CA & "ipa-certupdate" is for renewing certificates, 
so should I use "ipa cert-request" to get renew / new certificates. And 
pki-tomcatd service broke even before certificates got expired with 
authentication error (48). By the way here is the Reddit thread I've created, 
which has better formatting.

Here is the output of gercert list command: Please note the status of first 6 
changes from SUBMITTING to MONITORING while the status of the last 3 changes 
from SUBMITTING to CA_UNREACHABLE

Number of certificates and requests being tracked: 9.
Request ID '20190129222559':
        status: MONITORING
        stuck: no
        key pair storage: type=FILE,location='/var/lib/ipa/ra-agent.key'
        certificate: type=FILE,location='/var/lib/ipa/ra-agent.pem'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=IPA RA,O=ourorg.COM
        expires: 2021-01-18 22:25:59 UTC
        key usage: digitalSignature,keyEncipherment,dataEncipherment
        eku: id-kp-serverAuth,id-kp-clientAuth
        pre-save command: /usr/libexec/ipa/certmonger/renew_ra_cert_pre
        post-save command: /usr/libexec/ipa/certmonger/renew_ra_cert
        track: yes
        auto-renew: yes
Request ID '20190129222609':
        status: MONITORING
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='auditSigningCert 
cert-pki-ca',token='NSS Certificate DB',pin set
        certificate: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='auditSigningCert 
cert-pki-ca',token='NSS Certificate DB'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=CA Audit,O=ourorg.COM
        expires: 2021-01-18 22:25:41 UTC
        key usage: digitalSignature,nonRepudiation
        pre-save command: /usr/libexec/ipa/certmonger/stop_pkicad
        post-save command: /usr/libexec/ipa/certmonger/renew_ca_cert 
"auditSigningCert cert-pki-ca"
        track: yes
        auto-renew: yes
Request ID '20190129222610':
        status: MONITORING
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='ocspSigningCert 
cert-pki-ca',token='NSS Certificate DB',pin set
        certificate: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='ocspSigningCert 
cert-pki-ca',token='NSS Certificate DB'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=OCSP Subsystem,O=ourorg.COM
        expires: 2021-01-18 22:25:41 UTC
        eku: id-kp-OCSPSigning
        pre-save command: /usr/libexec/ipa/certmonger/stop_pkicad
        post-save command: /usr/libexec/ipa/certmonger/renew_ca_cert 
"ocspSigningCert cert-pki-ca"
        track: yes
        auto-renew: yes
Request ID '20190129222611':
        status: MONITORING
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='subsystemCert 
cert-pki-ca',token='NSS Certificate DB',pin set
        certificate: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='subsystemCert 
cert-pki-ca',token='NSS Certificate DB'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=CA Subsystem,O=ourorg.COM
        expires: 2021-01-18 22:25:41 UTC
        key usage: 
digitalSignature,nonRepudiation,keyEncipherment,dataEncipherment
        eku: id-kp-clientAuth
        pre-save command: /usr/libexec/ipa/certmonger/stop_pkicad
        post-save command: /usr/libexec/ipa/certmonger/renew_ca_cert 
"subsystemCert cert-pki-ca"
        track: yes
        auto-renew: yes
Request ID '20190129222612':
        status: MONITORING
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='caSigningCert 
cert-pki-ca',token='NSS Certificate DB',pin set
        certificate: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='caSigningCert 
cert-pki-ca',token='NSS Certificate DB'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=Certificate Authority,O=ourorg.COM
        expires: 2039-02-04 17:27:12 UTC
        key usage: digitalSignature,nonRepudiation,keyCertSign,cRLSign
        pre-save command: /usr/libexec/ipa/certmonger/stop_pkicad
        post-save command: /usr/libexec/ipa/certmonger/renew_ca_cert 
"caSigningCert cert-pki-ca"
        track: yes
        auto-renew: yes
Request ID '20190129222613':
        status: MONITORING
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='Server-Cert 
cert-pki-ca',token='NSS Certificate DB',pin set
        certificate: 
type=NSSDB,location='/etc/pki/pki-tomcat/alias',nickname='Server-Cert 
cert-pki-ca',token='NSS Certificate DB'
        CA: dogtag-ipa-ca-renew-agent
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=login1.ourorg.com,O=ourorg.COM
        expires: 2021-01-18 22:25:41 UTC
        dns: login1.ourorg.com
        key usage: digitalSignature,keyEncipherment,dataEncipherment
        eku: id-kp-serverAuth
        pre-save command: /usr/libexec/ipa/certmonger/stop_pkicad
        post-save command: /usr/libexec/ipa/certmonger/renew_ca_cert 
"Server-Cert cert-pki-ca"
        track: yes
        auto-renew: yes
Request ID '20190129222625':
        status: CA_UNREACHABLE
        ca-error: Server at https://login1.ourorg.com/ipa/xml failed request, 
will retry: -504 (libcurl failed to execute the HTTP POST transaction, 
explaining:  TCP connection reset by peer).
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/dirsrv/slapd-ourorg-COM',nickname='Server-Cert',token='NSS
 Certificate DB',pinfile='/etc/dirsrv/slapd-ourorg-COM/pwdfile.txt'
        certificate: 
type=NSSDB,location='/etc/dirsrv/slapd-ourorg-COM',nickname='Server-Cert',token='NSS
 Certificate DB'
        CA: IPA
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=login1.ourorg.com,O=ourorg.COM
        expires: 2021-01-29 22:26:25 UTC
        dns: login1.ourorg.com
        principal name: ldap/[email protected]
        key usage: 
digitalSignature,nonRepudiation,keyEncipherment,dataEncipherment
        eku: id-kp-serverAuth,id-kp-clientAuth
        pre-save command: 
        post-save command: /usr/libexec/ipa/certmonger/restart_dirsrv ourorg-COM
        track: yes
        auto-renew: yes
Request ID '20190129222654':
        status: CA_UNREACHABLE
        ca-error: Server at https://login1.ourorg.com/ipa/xml failed request, 
will retry: -504 (libcurl failed to execute the HTTP POST transaction, 
explaining:  TCP connection reset by peer).
        stuck: no
        key pair storage: 
type=NSSDB,location='/etc/httpd/alias',nickname='Server-Cert',token='NSS 
Certificate DB',pinfile='/etc/httpd/alias/pwdfile.txt'
        certificate: 
type=NSSDB,location='/etc/httpd/alias',nickname='Server-Cert',token='NSS 
Certificate DB'
        CA: IPA
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=login1.ourorg.com,O=ourorg.COM
        expires: 2021-01-29 22:26:54 UTC
        dns: login1.ourorg.com
        principal name: HTTP/[email protected]
        key usage: 
digitalSignature,nonRepudiation,keyEncipherment,dataEncipherment
        eku: id-kp-serverAuth,id-kp-clientAuth
        pre-save command: 
        post-save command: /usr/libexec/ipa/certmonger/restart_httpd
        track: yes
        auto-renew: yes
Request ID '20190129222703':
        status: SUBMITTING
        stuck: no
        key pair storage: type=FILE,location='/var/kerberos/krb5kdc/kdc.key'
        certificate: type=FILE,location='/var/kerberos/krb5kdc/kdc.crt'
        CA: IPA
        issuer: CN=Certificate Authority,O=ourorg.COM
        subject: CN=login1.ourorg.com,O=ourorg.COM
        expires: 2021-01-29 22:27:03 UTC
        principal name: krbtgt/[email protected]
        key usage: 
digitalSignature,nonRepudiation,keyEncipherment,dataEncipherment
        eku: id-kp-serverAuth,id-pkinit-KPKdc
        pre-save command: 
        post-save command: /usr/libexec/ipa/certmonger/renew_kdc_cert
        track: yes
        auto-renew: yes
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