Sounds like you want something like a FreeBSD version of DOS Linux.  See
http://www.tux.org/pub/people/kent-robotti/index.html.  How do they
overcome this problem?

Greg

At 02:45 PM 5/19/99 -0700, Carlos C. Tapang wrote:
>Thanks to all who pitched in their input to this issue. Most users of my
>system are running Windows and don't want to have to reformat or repartition
>their hard disk. So I am stuck with the DOS file system. I think the best
>solution is to have my users use a FreeBSD boot floppy. The floppy will have
>/boot/loader which I will point to the DOS-formatted hard disk in which the
>kernel resides.
>
>>The flags and values in the BIOS data area would not necessarily
>>be at their default values, so restoring the vectors might itself
>>crash the BIOS (because it's reconfigured itself for the present
>>vectors/drivers, not the default ones).
>>
>>Some hardware (eg. popular SCSI controllers) also configures itself
>>differently when it finds it's running on DOS/Windows.  This kind
>>of thing in any scenario in which we start DOS then kill it would
>>have the potential to seriously confuse matters.
>>
>>Incidentally (to correct a point made in an earlier post) *all*
>>versions of DOS since 1.x have changed interrupt vectors.  This is
>>not a DOS 7+ phenomenon.  The reason FBSDBOOT.EXE is deprecated at
>>this stage is that, in the future, VM86 will be increasingly relied
>>on by FreeBSD.  And FBSDBOOT.EXE has *never* worked reliably in a
>>VM86 context.
>>
>>--
>>Robert Nordier
>>
>>
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>
>
>
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