Hi
I received the following error message while I use fink to install CNS.
Thank you in advance for any suggestion.
Wadud
Trial 1:
1. I have downloaded cns_solve 1.2 from cns -web in
/usr/local directory then
2. Edit the file cns_solve_env
3. after running source cns_solve_env, Get the error msg
bash-3.2$ source cns_solve_env
bash: setenv: command not found
bash: setenv: command not found
bash: ./cns_solve_env: line 32: syntax error near unexpected token `setenv'
bash: ./cns_solve_env: line 32: ` if ( ! $?CNS_ARCH ) setenv CNS_ARCH
`$CNS_SOLVE/bin/getarch`'
cns_solve-env files
“---------------------
“>>>>>> Important: define the location of the CNSsolve directory <<<<<<
#
# CHANGE THE NEXT LINE TO POINT TO THE LOCATION OF THE CNSsolve DIRECTORY
setenv CNS_SOLVE '/usr/local'
#
# ==========================================================================
#
# full expansion of the CNS_SOLVE variable prior to use.
#
setenv CNS_SOLVE $CNS_SOLVE
#
# ==========================================================================
#
# get the machine architecture
#
if ( -d $CNS_SOLVE ) then
if ( ! $?CNS_ARCH ) setenv CNS_ARCH `$CNS_SOLVE/bin/getarch`
else
setenv CNS_ARCH 'unknown'
endif
#
# ==========================================================================
#
# system variables for OpenMP
#
# The default stack sizes are usually insufficient, especially when
# CNS is compiled using OpenMP. If the stack sizes are too
# small segfaults may occur. Recommended setting for "stacksize":
limit stacksize unlimited
#
# KMP_STACKSIZE is specific for Intel ifort, icc:
##setenv KMP_STACKSIZE 256m
#
# OMP_STACKSIZE is used by all compilers:
setenv OMP_STACKSIZE 256m
#
# Uncomment the following line and change as appropriate to set the number
# of processors (threads) to use.
###setenv OMP_NUM_THREADS 4
-----------------“
Trial 2:
1. Copy the file cns-binary.info
/sw/fink/dists/local/main/finkinfo
2.fink -y install cns-binary
error message are
bash-3.2$ fink -y install cns-binary
Password:
Information about 10477 packages read in 1 seconds.
The package 'cns-binary' will be built and installed.
Reading dependency for cns-binary-1.2-2...
Reading build dependency for cns-binary-1.2-2...
Reading build conflict for cns-binary-1.2-2...
The following package will be installed or updated:
cns-binary
curl --connect-timeout 30 -f -L -A 'fink/0.31.2' -O
http://gohara.wustl.edu/Software/Software/crystallography_files/cns1.2_univ.zip
curl: (6) Couldn't resolve host 'gohara.wustl.edu'
### execution of curl failed, exit code 6
Downloading the file "cns1.2_univ.zip" failed.
(1) Give up
(2) Retry the same mirror
How do you want to proceed? [2] (assuming default)
curl --connect-timeout 30 -f -L -A 'fink/0.31.2' -O
http://gohara.wustl.edu/Software/Software/crystallography_files/cns1.2_univ.zip
My platform is
My Mac is 10.6.8, Fink 0.31.2, and Xcode 3.2.3.
bash-3.2$ fink list cns
Information about 10477 packages read in 0 seconds.
cns-binary 1.2-2 Crystallography
and NMR System v. 1.2 A. Brunger et al
libasyncns 0.8-1 Async DNS
resolver library
libasyncns-shlibs 0.8-1 Async DNS
resolver library
libasyncns0 0.1-1002 Library for
async DNS, development files
libasyncns0-shlibs 0.1-1002 Library for
async DNS, library
libicns1 0.7.1-2 Library for
manipulating Mac icns format
libicns1-bin 0.7.1-2 Utilities to
convert between icns and png
libicns1-shlibs 0.7.1-2 Library for
manipulating Mac icns format
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