The new files bin/makebase.bat and makebase.sh do not have the same permissions as the other files in bin, possibly because I committed them from a Windows machine.
Specifically, the file bin/makebase.sh is missing the eXecute permission. Any idea how to fix that? drwxrwxr-x. 2 ux ux 4096 Jul 2 21:17 . drwxrwxr-x. 10 ux ux 4096 Jul 2 21:17 .. -rwxrwxr-x. 1 ux ux 15528 Jul 2 21:17 catalina.bat -rwxrwxr-x. 1 ux ux 23463 Jul 2 21:17 catalina.sh -rw-rw-r--. 1 ux ux 1664 Jul 2 21:17 catalina-tasks.xml -rwxrwxr-x. 1 ux ux 2065 Jul 2 21:17 ciphers.bat -rwxrwxr-x. 1 ux ux 1997 Jul 2 21:17 ciphers.sh -rwxrwxr-x. 1 ux ux 1982 Jul 2 21:17 configtest.bat -rwxrwxr-x. 1 ux ux 1922 Jul 2 21:17 configtest.sh -rwxrwxr-x. 1 ux ux 8509 Jul 2 21:17 daemon.sh -rwxrwxr-x. 1 ux ux 2033 Jul 2 21:17 digest.bat -rwxrwxr-x. 1 ux ux 1965 Jul 2 21:17 digest.sh -rw-rw-r--. 1 ux ux 2381 Jul 2 21:17 makebase.bat <--- missing x -rw-rw-r--. 1 ux ux 2350 Jul 2 21:17 makebase.sh <--- missing x -rwxrwxr-x. 1 ux ux 7145 Jul 2 21:17 service.bat -rwxrwxr-x. 1 ux ux 3366 Jul 2 21:17 setclasspath.bat -rwxrwxr-x. 1 ux ux 3680 Jul 2 21:17 setclasspath.sh -rwxrwxr-x. 1 ux ux 1962 Jul 2 21:17 shutdown.bat -rwxrwxr-x. 1 ux ux 1902 Jul 2 21:17 shutdown.sh -rwxrwxr-x. 1 ux ux 1964 Jul 2 21:17 startup.bat -rwxrwxr-x. 1 ux ux 1904 Jul 2 21:17 startup.sh -rwxrwxr-x. 1 ux ux 4464 Jul 2 21:17 tool-wrapper.bat -rwxrwxr-x. 1 ux ux 5483 Jul 2 21:17 tool-wrapper.sh -rwxrwxr-x. 1 ux ux 1968 Jul 2 21:17 version.bat -rwxrwxr-x. 1 ux ux 1908 Jul 2 21:17 version.sh Thanks, Igal