Github user stain commented on a diff in the pull request:
https://github.com/apache/incubator-taverna-language/pull/39#discussion_r201984605
--- Diff:
taverna-scufl2-cwl/src/main/java/org/apache/taverna/scufl2/cwl/components/WorkflowProcess.java
---
@@ -0,0 +1,232 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ */
+
+package org.apache.taverna.scufl2.cwl;
+
+import java.io.File;
+import java.io.IOException;
+import java.util.Set;
+import java.util.HashSet;
+import java.util.Map;
+import java.util.HashMap;
+
+
+import org.apache.taverna.scufl2.api.core.Processor;
+import org.apache.taverna.scufl2.api.core.DataLink;
+import org.apache.taverna.scufl2.api.core.Workflow;
+
+import org.apache.taverna.scufl2.api.container.WorkflowBundle;
+
+import org.apache.taverna.scufl2.api.port.InputWorkflowPort;
+import org.apache.taverna.scufl2.api.port.OutputWorkflowPort;
+import org.apache.taverna.scufl2.api.port.InputProcessorPort;
+import org.apache.taverna.scufl2.api.port.OutputProcessorPort;
+import org.apache.taverna.scufl2.api.port.SenderPort;
+import org.apache.taverna.scufl2.api.port.ReceiverPort;
+
+import org.apache.taverna.scufl2.api.io.WorkflowBundleIO;
+import org.apache.taverna.scufl2.api.io.WriterException;
+
+import com.fasterxml.jackson.databind.JsonNode;
+
+public class WorkflowProcess implements Process {
+
+ private CWLParser cwlParser;
+
+ private Map<String, InputWorkflowPort> workflowInputs;
+ private Map<String, OutputWorkflowPort> workflowOutputs;
+ private Map<String, Processor> workflowProcessors;
+ private Map<String, InputProcessorPort> processorInputs;
+ private Map<String, OutputProcessorPort> processorOutputs;
+ private Set<DataLink> dataLinks;
+
+ private Converter converter;
+
+ public WorkflowProcess(JsonNode node) {
+ cwlParser = new CWLParser(node);
+ converter = new Converter();
+ workflowInputs = new HashMap<>();
+ workflowOutputs = new HashMap<>();
+ workflowProcessors = new HashMap<>();
+ processorInputs = new HashMap<>();
+ processorOutputs = new HashMap<>();
+ dataLinks = new HashSet<>();
+ this.parse();
+ this.receiverPorts = new HashSet(workflowInputs.values());
+ this.senderPorts = new HashSet(workflowOutputs.values());
+ }
+
+ public void parse() {
+ parseInputs();
+ parseOutputs();
+ Set<Step> cwlSteps = cwlParser.parseSteps();
+ parseProcessors(cwlSteps);
+ parseDataLinks(cwlSteps);
+
+ Workflow workflow = new Workflow();
+ Set<InputWorkflowPort> inputs = new
HashSet<>(workflowInputs.values());
+ Set<OutputWorkflowPort> outputs = new
HashSet<>(workflowOutputs.values());
+ Set<Processor> processors = new
HashSet<>(workflowProcessors.values());
+
+ workflow.setInputPorts(inputs);
+ workflow.setOutputPorts(outputs);
+ workflow.setProcessors(processors);
+ workflow.setDataLinks(dataLinks);
+
+// System.out.println(workflow);
+// writeWorkflowToFile(workflow);
+//
+// System.out.println("DEBUG WORKFLOW");
+// System.out.println(workflow.getInputPorts());
+// System.out.println(workflow.getOutputPorts());
+// System.out.println(workflow.getProcessors());
+
+ }
+
+ public void writeWorkflowToFile(Workflow workflow) {
--- End diff --
This function looks like test code, can you move it to something under
src/test?
---
