New updates for Ubuntu 12.04 solved the problem, its working correctly
again. Bug can be closed as solved.

** Changed in: unity (Ubuntu)
       Status: New => Fix Released

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https://bugs.launchpad.net/bugs/958083

Title:
  Unity 12.04 panel makes truecrypt crash

Status in “unity” package in Ubuntu:
  Fix Released

Bug description:
  When having in dconf configuration desktop->unity->panel

  systray-whitelist ['JavaEmbeddedFrame', 'Wine', 'scp-dbus-service',
  'Update-notifier', 'Truecrypt']

  then TrueCrypt crashes at startup:

  Gdk-WARNING **: GdkWindow 0x46000c9 unexpectedly destroyed
  The program 'truecrypt' received an X Window System error.
  This probably reflects a bug in the program.
  The error was 'BadWindow (invalid Window parameter)'.
    (Details: serial 802 error_code 3 request_code 18 minor_code 0)
    (Note to programmers: normally, X errors are reported asynchronously;
     that is, you will receive the error a while after causing it.
     To debug your program, run it with the --sync command line
     option to change this behavior. You can then get a meaningful
     backtrace from your debugger if you break on the gdk_x_error() function.)

  When removing 'TrueCrypt' from the whitelist TrueCrypt works (but
  without panel icon).

  This was working fine in Oneiric Ocelot but not after upgrade to
  Precise Pangolin Beta 1

  Is this a Unity bug?

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