I don't have a Gnome system, but if this is a Wayland bug, is it fixed
by this commit in Veusz (included in 4.1)?

https://github.com/veusz/veusz/commit/4cf5b5cbfca2fa8f32e36b42444c8cf0a9ccbe7e

The updated Debian package hasn't been uploaded yet:
https://salsa.debian.org/science-team/veusz

However, there's a binary available here which might indicate if it's
fixed: https://veusz.github.io/download/

This release also updates to Qt6, making the comparison more difficult.

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https://bugs.launchpad.net/bugs/2044382

Title:
  Some Qt-based applications open "another" icon under Gnome

Status in gnome-shell-extension-ubuntu-dock package in Ubuntu:
  Confirmed
Status in openscad package in Ubuntu:
  Confirmed
Status in quassel package in Ubuntu:
  Confirmed
Status in veusz package in Ubuntu:
  Confirmed

Bug description:
  I'm unsure if this is a bug in the affected applications, or in the
  gnome dock itself. Under Ubuntu 23.10 (mantic) and 24.04 (noble),
  running Quassel, Veusz, or OpenSCAD from a pinned icon on the left bar
  results in the pinned icon appearing "idle" (not running), and a
  second icon appearing below those that are pinned which apparently
  represents the running instance.

  Pressing the idle application icon (or pressing the Super+N shortcut
  for it) runs *another* instance of the application rather than
  switching to the running instance. The "extra" icon also cannot be
  pinned (and occasionally strange "copies" of it are left lying around
  if one tries to drag it to the pinned icon locations).

  This may be because these are all Qt-based applications, but I also
  run KeepassXC (another Qt application) without such issues (other than
  unusual window borders and icons which appear on both applications),
  hence why I'm unsure this is an issue in these applications or in the
  gnome dock. I'll attach a screenshot demonstrating the issue.

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