Hello John. I have tested this with a testing GMAIL account on the
Thunderbird 60 (latest version - manual testing upgrade) and version
57.0b2 (available through beta upgrade channel). In these two versions,
the deleted emails go correctly to the trash bin.

Just to clarify, 
In the account --> settings --> server settings,  
under "Server Settings" section in the right hand pane, you have the following 
Under “When I delete a message:” 
you have selected the “move it to this folder:” option
and in the drop down to the right of this option,
you have selected “Gmail” and then “Trash”
Is that correct?

Could you also tell me what version of Ubuntu you have?
Thanks
G

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You received this bug notification because you are a member of Desktop
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https://bugs.launchpad.net/bugs/1215524

Title:
  Thunderbird deletes messages rather than move them to Deleted

Status in Mozilla Thunderbird:
  Unknown
Status in thunderbird package in Ubuntu:
  Confirmed

Bug description:
  On Ubuntu Precise 64 bit using Thunderbird v17.0.8, deleting a message
  (on Gmail account using IMAP) from Inbox, the message is not moved to
  the Deleted folder but is removed completely.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: thunderbird 17.0.8+build1-0ubuntu0.12.04.1
  ProcVersionSignature: Ubuntu 3.5.0-39.60~precise1-generic 3.5.7.17
  Uname: Linux 3.5.0-39-generic x86_64
  AddonCompatCheckDisabled: False
  AlsaVersion: Advanced Linux Sound Architecture Driver Version 1.0.25.
  AplayDevices:
   **** List of PLAYBACK Hardware Devices ****
   card 0: PCH [HDA Intel PCH], device 0: ALC887-VD Analog [ALC887-VD Analog]
     Subdevices: 1/1
     Subdevice #0: subdevice #0
  ApportVersion: 2.0.1-0ubuntu17.4
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC0:  john       2158 F.... pulseaudio
   /dev/snd/controlC1:  john       2158 F.... pulseaudio
  BuildID: 20130804001519
  CRDA: Error: command ['iw', 'reg', 'get'] failed with exit code 1: nl80211 
not found.
  Card0.Amixer.info:
   Card hw:0 'PCH'/'HDA Intel PCH at 0xf7d00000 irq 43'
     Mixer name : 'Realtek ALC887-VD'
     Components : 'HDA:10ec0887,1458a002,00100302'
     Controls      : 40
     Simple ctrls  : 21
  Card1.Amixer.info:
   Card hw:1 'U0x46d0x9a4'/'USB Device 0x46d:0x9a4 at usb-0000:00:1d.0-1.6.5, 
high speed'
     Mixer name : 'USB Mixer'
     Components : 'USB046d:09a4'
     Controls      : 2
     Simple ctrls  : 1
  Card1.Amixer.values:
   Simple mixer control 'Mic',0
     Capabilities: cvolume cvolume-joined cswitch cswitch-joined penum
     Capture channels: Mono
     Limits: Capture 0 - 14
     Mono: Capture 7 [50%] [29.00dB] [on]
  Channel: Unavailable
  Date: Thu Aug 22 17:11:42 2013
  ForcedLayersAccel: False
  IfupdownConfig:
   auto lo
   iface lo inet loopback
  InstallationMedia: Ubuntu 12.04.2 LTS "Precise Pangolin" - Release amd64 
(20130213)
  IpRoute:
   default via 192.168.1.1 dev eth0  proto static 
   169.254.0.0/16 dev eth0  scope link  metric 1000 
   192.168.1.0/24 dev eth0  proto kernel  scope link  src 192.168.1.12  metric 1
  IwConfig:
   eth0      no wireless extensions.
   
   lo        no wireless extensions.
  MarkForUpload: True
  PrefSources:
   prefs.js
   
[Profile]/extensions/{e2fda1a4-762b-4020-b5ad-a41df1933103}/defaults/preferences/lightning.js
   
[Profile]/extensions/{a62ef8ec-5fdc-40c2-873c-223b8a6925cc}/defaults/preferences/preferences.js
  ProcEnviron:
   LANGUAGE=en_GB:en
   TERM=xterm
   PATH=(custom, no user)
   LANG=en_GB.UTF-8
   SHELL=/bin/bash
  Profiles: Profile0 (Default) - LastVersion=17.0.8/20130804001519 (In use)
  RelatedPackageVersions:
   rhythmbox-mozilla 2.96-0ubuntu4.3
   totem-mozilla     3.0.1-0ubuntu21.1
  RfKill:
   0: hci0: Bluetooth
        Soft blocked: no
        Hard blocked: no
  RunningIncompatibleAddons: False
  SourcePackage: thunderbird
  UpgradeStatus: No upgrade log present (probably fresh install)
  WifiSyslog:
   
  dmi.bios.date: 12/19/2011
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: FA
  dmi.board.asset.tag: To be filled by O.E.M.
  dmi.board.name: H61M-S2PV
  dmi.board.vendor: INTEL Corporation
  dmi.board.version: To be filled by O.E.M.
  dmi.chassis.asset.tag: To Be Filled By O.E.M.
  dmi.chassis.type: 3
  dmi.chassis.vendor: Gigabyte Tecohnology Co., Ltd.
  dmi.chassis.version: To Be Filled By O.E.M.
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrFA:bd12/19/2011:svnGigabyteTecohnologyCo.,Ltd.:pnH61M-S2PV:pvrTobefilledbyO.E.M.:rvnINTELCorporation:rnH61M-S2PV:rvrTobefilledbyO.E.M.:cvnGigabyteTecohnologyCo.,Ltd.:ct3:cvrToBeFilledByO.E.M.:
  dmi.product.name: H61M-S2PV
  dmi.product.version: To be filled by O.E.M.
  dmi.sys.vendor: Gigabyte Tecohnology Co., Ltd.

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