I believe it is an ibus-daemon bug. I had the problem at least in gnome-
terminal, firefox (but not under Unity), thunderbird. I solved it less
brutally than flushing the whole user DConf database by resetting one
key:

dconf reset /org gnome/desktop/interface/gtk-im-module

which contained the value 'gtk-im-context-simple'.

It worked:

* for gnome-terminal after logging again, restarting the program wasn't enough.
* for Firefox and Thunderbird only after restarting the system. The only user 
program that didn't restart after a relog was 'ibus-daemon', hence I believe it 
is his bug.

What makes me wonder is why the Compose key worked on Firefox only under
Unity and not GNOME 3. There might be a second bug there.

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https://bugs.launchpad.net/bugs/1573755

Title:
  compose and dead keys stopped working in gnome terminal

Status in firefox package in Ubuntu:
  Confirmed
Status in gnome-terminal package in Ubuntu:
  Confirmed
Status in nautilus package in Ubuntu:
  Confirmed
Status in thunderbird package in Ubuntu:
  Confirmed

Bug description:
  After upgrading to 16.04, entering characters using dead keys and
  using the Compose key stopped working in Gnome Terminal, acting like
  they are normal (non-dead) keys.

  Other applications, even those who use the same libvte (e.g. ROXTerm),
  don't have this issue.

  This happens with both the "Belgian" and "English international with
  AltGr dead keys" layouts.

  ProblemType: Bug
  DistroRelease: Ubuntu 16.04
  Package: gnome-terminal 3.18.3-1ubuntu1
  ProcVersionSignature: Ubuntu 4.4.0-21.37-generic 4.4.6
  Uname: Linux 4.4.0-21-generic x86_64
  ApportVersion: 2.20.1-0ubuntu2
  Architecture: amd64
  CurrentDesktop: Unity
  Date: Fri Apr 22 20:45:33 2016
  InstallationDate: Installed on 2013-12-16 (857 days ago)
  InstallationMedia: Ubuntu 13.10 "Saucy Salamander" - Release amd64 
(20131016.1)
  SourcePackage: gnome-terminal
  UpgradeStatus: Upgraded to xenial on 2016-04-22 (0 days ago)

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