Due to a hard drive crash I have since reinstalled / upgraded to:

kernel: 3.8.0-31-generic, 
OS: Ubuntu 12.04.3 LTS, 
Desktop: Gnome3, Gnome Shell 3.4.1

...and this problem doesn't appear to be affecting the system any more.
It was probably fixed by an update as suggested in comment #2.

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https://bugs.launchpad.net/bugs/1220994

Title:
  [P5E3 Deluxe,AD1988B, playback] No sound at all during "speaker test"
  under "system settings".

Status in “alsa-driver” package in Ubuntu:
  New

Bug description:
  Quick Specs:
  -----------------
  OS: Ubuntu 12.04.3, Gnome3 desktop (not classic)
  Motherboard: ASUS P5E3 DELUXE/WiFi-AP@n
  alsa-base version: 1.0.25+dfsg-0ubuntu1.1
  alsa-tools version: 1.0.25-1ubuntu1
  alsa-tools-gui version: 1.0.25-1ubuntu1
  alsa-utils version: 1.0.25-1ubuntu5.2
  alsamixergui version: 0.9.0rc2-1-9.1
  All ALSA version are the ones reported by synaptic package manager.

  Description of the problem:
  ---------------------------------------
  1.) There is no audio when clicking on the the "test" buttons under the 
speaker icons located in "System Settings" --> "Audio" --> "Hardware" --> 
"Speaker Test".  Note that I do get audio when doing a similar test from the 
command line which is partly what makes me think this is a bug.

  Notes:
  ---------
  1.) Ubuntu makes it very difficult to figure out which package belongs to 
which graphical interface. In the "Speaker Test" section of the System Settings 
mentioned above, I have no way of finding out what package is responsible for 
that interface.

  2.) My speakers are on, and all relevant volume controls have been
  turned up both in hardware and in software. This is evident by the
  fact that I can hear audio (although with no way to control the base
  being at max volume all the time no matter what is done to try and
  stop this from occurring) from test performed on the command line.

  3.) I followed this trouble shooting guide all the way through to the end 
without solving the problem.
  https://help.ubuntu.com/community/SoundTroubleshootingProcedure
  Extra information on the software settings and specs obtained while following 
this trouble shooting guide can be found here:
  http://www.alsa-project.org/db/?f=46175bd3a0eecc64a3e60efeec1869080ed89629

  4.) I filed a question (with all the information recommended from note 3 
above) that no one answered at the following web address:
  https://answers.launchpad.net/ubuntu/+source/alsa-driver/+question/235159

  5.) I followed the steps outlines at the following web address which brought 
me here:
  https://wiki.ubuntu.com/DebuggingSoundProblems

  Questions:
  --------------
  If any one knows what package is responsible for the "Speaker Test" graphical 
interface, can you please explain to me how to bug test this further to see if 
it is the GUI or if it is some package the GUI is communicating with that is 
responsible for no sound being heard when clicking on the "test" icons 
described in the description of the problem above?

  Specific requested info:
  ===================
  1.) lsb_release -rd
  --------------------
  Description:  Ubuntu 12.04.3 LTS
  Release:      12.04

  2.) apt-cashe policy pkgname?
  ------------------------------------
  Package name still needed, see question above.

  3.) What I expected to happen.
  ------------------------------------------
  When I clicked on the "test" button under each speaker icon of the 5.1 analog 
surround sound room map shown under "System Settings" --> "Audio" --> 
"Hardware" --> "Speaker Test", I expected to hear the relevant audio file 
played for the speaker icon "test" button that I was clicking on. So for 
example, if I clicked on the "Front Center" "test" button, I expected to hear 
the audio "Front Center" to be played over the front center speaker.

  4.) What happened instead.
  No audio was heard at all when clicking on any of the "test" buttons under 
there respective speaker icons noting that the volume was turned up and that 
audio could be heard when doing the same test from the command line as follows:
  speaker-test -Dplug:surround51 -c6 -l1 -twav

  That command line does produce sound on each speaker with the correct 
respective audio file (with the exception of the sub-woofer which is labeled 
LFE in the test but the audio played is "rear center" and appears to come out 
the front center channel and the sub-woofer at the same time but that problem 
is most likely a hardware issue). For reference that command also output the 
following text to the command line while it was performing the speaker tests.
  speaker-test 1.0.25

  Playback device is plug:surround51
  Stream parameters are 48000Hz, S16_LE, 6 channels
  WAV file(s)
  Rate set to 48000Hz (requested 48000Hz)
  Buffer size range from 22 to 5461
  Period size range from 11 to 2730
  Using max buffer size 5460
  Periods = 4
  was set period_size = 1365
  was set buffer_size = 5460
   0 - Front Left
   4 - Center
   1 - Front Right
   3 - Rear Right
   2 - Rear Left
   5 - LFE
  Time per period = 8.564185

  Please let me know if I can add any extra information to this request or if I 
need to clarify my question any further.
  Thanks.

  ProblemType: Bug
  DistroRelease: Ubuntu 12.04
  Package: alsa-base 1.0.25+dfsg-0ubuntu1.1
  ProcVersionSignature: Ubuntu 3.2.0-52.78-generic 3.2.48
  Uname: Linux 3.2.0-52-generic x86_64
  NonfreeKernelModules: nvidia
  AlsaVersion: Advanced Linux Sound Architecture Driver Version 1.0.24.
  ApportVersion: 2.0.1-0ubuntu17.4
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC0:  sysop      2064 F.... pulseaudio
  Card0.Amixer.info:
   Card hw:0 'Intel'/'HDA Intel at 0xf9ff8000 irq 45'
     Mixer name : 'Analog Devices AD1988B'
     Components : 'HDA:11d4198b,1043829b,00100400'
     Controls      : 50
     Simple ctrls  : 27
  Date: Wed Sep  4 19:07:26 2013
  InstallationMedia: Ubuntu 12.04 LTS "Precise Pangolin" - Release amd64 
(20120425)
  MarkForUpload: True
  PackageArchitecture: all
  SourcePackage: alsa-driver
  Symptom: audio
  Symptom_AlsaPlaybackTest: ALSA playback test through plughw:Intel successful
  Symptom_Card: Built-in Audio - HDA Intel
  Symptom_PulsePlaybackTest: PulseAudio playback test successful
  Symptom_Type: No sound at all
  Title: [HDA-Intel - HDA Intel, playback] No sound at all
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 06/18/2009
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: 1415
  dmi.board.asset.tag: To Be Filled By O.E.M.
  dmi.board.name: P5E3 Deluxe
  dmi.board.vendor: ASUSTeK Computer INC.
  dmi.board.version: Rev 1.xx
  dmi.chassis.asset.tag: Asset-1234567890
  dmi.chassis.type: 3
  dmi.chassis.vendor: Chassis Manufacture
  dmi.chassis.version: Chassis Version
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvr1415:bd06/18/2009:svnSystemmanufacturer:pnP5E3Deluxe:pvrSystemVersion:rvnASUSTeKComputerINC.:rnP5E3Deluxe:rvrRev1.xx:cvnChassisManufacture:ct3:cvrChassisVersion:
  dmi.product.name: P5E3 Deluxe
  dmi.product.version: System Version
  dmi.sys.vendor: System manufacturer
  mtime.conffile..etc.modprobe.d.alsa.base.conf: 2013-09-04T18:51:26.148700

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