So, the first broken nightly appears to be
https://ftp.mozilla.org/pub/mozilla.org/thunderbird/nightly/2012/06/2012-06-20-03-02-01
-comm-central/thunderbird-16.0a1.en-US.linux-x86_64.tar.bz2

(https://ftp.mozilla.org/pub/mozilla.org/thunderbird/nightly/2012/06/2012-06-19-03-02-01
-comm-central/thunderbird-16.0a1.en-US.linux-x86_64.tar.bz2 works ok)

I've also tracked it down to a specific message too. There seems to be 2 issues 
at play:
1) That the message is saved offline at all, as it is larger than the 50kB limit
2) When it is downloaded it never seems to get marked as available offline, so 
it is downloaded repeatedly every time the folder is updated (and ends up in 
the mbox file multiple times)

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https://bugs.launchpad.net/bugs/1068921

Title:
  Mailbox grows endlessly, heavy traffic

Status in Mozilla Thunderbird Mail and News:
  In Progress
Status in “thunderbird” package in Ubuntu:
  Confirmed

Bug description:
  Yesterday I noticed that my Internet connection keeps transferring a lot of 
data. After a while I checked with nethogs and discovered this was caused by 
Thunderbird.
  Today I got a warning that my HDD was near full.
  In this 2 days, the mailbox had grown to 20 GB, while in reality it should be 
around 1 GB (a fresh zipped backup has 600 MB).

  I removed the .thunderbird folder and configured my IMAP mailbox from 
scratch. The same happened again.
  I think this is not related to a somehow special configuration of my PC bcs 
my colleague discovered it's the same on his machine. Without checking, he 
wouldn't have noticed yet bcs of a much bigger HDD...

  We couldn't yet find out what exactly happens / which data is transferred 
again and again.
  I suspect it's related to the last thunderbird update.

  Ubuntu 12.04
  Tunderbird 16.0.1+build1-0ubuntu0.12.04.1

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