As of Thunderbird 16, Thunderbird is apparently back to looking in
/usr/lib/thunderbird/defaults/pref and ignoring /etc/thunderbird/pref.
(At least, strace'ing can find no attempts by Thunderbird to look in
/etc/thunderbird for anything).  No mention of this is made in the
changelog.

This is incredibly annoying from a site configuration standpoint.

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https://bugs.launchpad.net/bugs/638211

Title:
  Thunderbird prefs file references /usr/lib/thunderbird which doesn't
  exist

Status in “thunderbird” package in Ubuntu:
  Triaged

Bug description:
  Binary package hint: thunderbird

  Thunderbird 3.0.7+build1+nobinonly-0ubuntu0.10.04.1 fails to look in
  /usr/lib/thunderbird for configuration files.  It now only looks in
  /usr/lib/thunderbird-3.0.7.

  This is in direct conflict with /etc/thunderbird/pref/thunderbird.js, which 
says:
  """
  // You can, with this file and all files present in the
  // /etc/thunderbird/pref directory, override any preference that is
  // present in /usr/lib/thunderbird/defaults/pref directory.
  """

  For our site configuration, we set a new value for
  general.config.filename, and store that file in /usr/lib/thunderbird.
  This worked fine in Jaunty and Karmic.  However, under Lucid, this
  causes Thunderbird to unfortunately exit with "Failed to read the
  configuration file", since it's looking for our config file in
  /usr/lib/thunderbird-3.0.7.

  If this is the new upstream behavior, that's fine, but then the
  comments in /etc/thunderbird/pref/thunderbird.js need to be updated to
  replace this.  Additionally, it would be nice if there was some way to
  programmatically determine the name of that directory that was
  something other than "dpkg-query and sed".

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