Your message dated Sat, 15 Aug 2009 12:59:07 +0000
with message-id <e1mciqh-0001fb...@ries.debian.org>
and subject line Bug#530753: fixed in staden-io-lib 1.12.1-1
has caused the Debian Bug report #530753,
regarding ITP: staden-io-lib -- The Staden io_lib and its associated programs
(three binary packages).
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
530753: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=530753
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <ple...@debian.org>
Package name : staden-io-lib
Version : 1.11.6.1
Programming Lang: C
Description : The Staden io_lib and its associated programs (three binary
packages).
debian/control
--------------
Source: staden-io-lib
Section: science
Priority: optional
Maintainer: Debian-Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <ple...@debian.org>
Build-Depends: debhelper (>= 7), autotools-dev, quilt
Standards-Version: 3.8.1
Homepage: http://staden.sourceforge.net/
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/staden-io-lib/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/staden-io-lib/trunk/
Package: staden-io-lib-utils
Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: programs for maniuplating DNA sequencing files
The io_lib from the Staden package is a library of file reading and writing
code to provide a general purpose trace file (and Experiment File) reading
interface. It has been compiled and tested on a variety of unix systems,
MacOS X and MS Windows.
.
This package contains the programs that are distributed with the Staden io_lib
for manipulating and converting sequencing data files, and in particular files
to maniuplate short reads generated by second and third generation sequencers
and stored in SRF format.
Package: libstaden-read-dev
Section: libdevel
Architecture: any
Depends: libstaden-read1 (= ${binary:Version}), ${misc:Depends}
Description: development files for libstaden-read
This package contains the header and development files needed to build
programs and packages using the Staden io_lib.
Package: libstaden-read1
Section: libs
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Staden library for reading and writing DNA sequencing results.
This package contains the Staden io_lib, that is renamed in Debian and Fedora
‘staden-read’ instead of ‘read’. This library supports various DNA sequence
read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF.
debian/copyright
----------------
Format: Machine-readable license summary, see
‘http://dep.debian.net/deps/dep5/’.
Name: io-lib
Contact: James Bonfield, Simon Dear, Rodger Staden (io-lib)
Source: http://qa.debian.org/watch/sf.php/staden/io_lib-1.11.6.1.tar.gz
Copyright: © 1994 Medical Research Council
© Genome Research Ltd (GRL)
License: GRL or MRC
Upstream-Comment: Newer files and changes are copyright Genome Research Ltd
using the following compatible BSD licence. Disentangling which is which is
somewhat tricky, but it's sufficient to say that work in the CVS tree from
August 2002 will be bound by the GRL licence instead.
License: GRL
Copyright (c), Genome Research Ltd (GRL).
All rights reserved.
.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials
provided with the distribution.
.
* Neither the name of the Genome Research Limited nor the
names of its contributors may be used to endorse or promote
products derived from this software without specific prior
written permission.
.
THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
License: MRC
Copyright (c) Medical Research Council 1994. All rights reserved.
.
Permission to use, copy, modify and distribute this software and its
documentation for any purpose is hereby granted without fee, provided that
this copyright and notice appears in all copies.
.
This file was written by James Bonfield, Simon Dear, Rodger Staden,
as part of the Staden Package at the MRC Laboratory of Molecular
Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
.
MRC disclaims all warranties with regard to this software.
Files: io_lib/open_trace_file.c
License: GRL or MRC, and 454
This files contains some source code owned by 454 Life Sciences Corporation.
License: 454
Copyright (c)[2001-2005] 454 Life Sciences Corporation. All Rights Reserved.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
.
IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE.
.
Permission to use, copy, modify and distribute this software and its
documentation for any purpose is hereby granted without fee, provided
that this copyright and notice appears in all copies.
Files: io_lib/sff.c:
Copyright: © Genome Research Limited (GRL)
© 2001-2005 454 Life Sciences Corporation.
License: GRL and 454
This file contains some extracts from a file owened by the 454 Life Sciences
Corporation.
Files: debian/*
Copyright: 2008–2009 Charles Plessy <ple...@debian.org>
License: PD
Please treat these files as if they were in your country’s public domain.
--- End Message ---
--- Begin Message ---
Source: staden-io-lib
Source-Version: 1.12.1-1
We believe that the bug you reported is fixed in the latest version of
staden-io-lib, which is due to be installed in the Debian FTP archive:
libstaden-read-dev_1.12.1-1_amd64.deb
to pool/main/s/staden-io-lib/libstaden-read-dev_1.12.1-1_amd64.deb
libstaden-read1_1.12.1-1_amd64.deb
to pool/main/s/staden-io-lib/libstaden-read1_1.12.1-1_amd64.deb
staden-io-lib-utils_1.12.1-1_amd64.deb
to pool/main/s/staden-io-lib/staden-io-lib-utils_1.12.1-1_amd64.deb
staden-io-lib_1.12.1-1.diff.gz
to pool/main/s/staden-io-lib/staden-io-lib_1.12.1-1.diff.gz
staden-io-lib_1.12.1-1.dsc
to pool/main/s/staden-io-lib/staden-io-lib_1.12.1-1.dsc
staden-io-lib_1.12.1.orig.tar.gz
to pool/main/s/staden-io-lib/staden-io-lib_1.12.1.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 530...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <ple...@debian.org> (supplier of updated staden-io-lib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 10 Aug 2009 23:32:59 +0900
Source: staden-io-lib
Binary: staden-io-lib-utils libstaden-read-dev libstaden-read1
Architecture: source amd64
Version: 1.12.1-1
Distribution: unstable
Urgency: low
Maintainer: Debian-Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Charles Plessy <ple...@debian.org>
Description:
libstaden-read-dev - development files for libstaden-read
libstaden-read1 - Staden library for reading and writing DNA sequencing results
staden-io-lib-utils - programs for maniuplating DNA sequencing files
Closes: 530753
Changes:
staden-io-lib (1.12.1-1) unstable; urgency=low
.
* Initial release (Closes: #530753)
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