Your message dated Tue, 08 Nov 2022 19:10:16 +0000
with message-id <e1ostze-00eoxd...@fasolo.debian.org>
and subject line Bug#1023322: fixed in seqan-needle 1.0.1.0.0.git.3011926+ds-1
has caused the Debian Bug report #1023322,
regarding ITP: seqan-needle -- pre-filter for the counting of very large
collections of nucleotide sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1023322: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1023322
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
X-Debbugs-Cc: cru...@debian.org
Subject: ITP: seqan-needle -- pre-filter for the counting of very large
collections of nucleotide sequences
Package: wnpp
Owner: Michael R. Crusoe <cru...@debian.org>
Severity: wishlist
* Package name : seqan-needle
Version : 1.0.1.0.0.git.3011926+ds
Upstream Author : Mitra Darvish
* URL : https://github.com/seqan/needle
* License : BSD-3-clause
Programming Lang: C
Description : pre-filter for the counting of very large collections of
nucleotide sequences
Needle is a tool for semi-quantitative analysis of very large collections of
nucleotide sequences.
.
Needle stores its data in multiple interleaved Bloom filter, a fast and space
efficient probabilistic data structure and uses a windowing scheme (also called
minimisers) to reduce the amount of data to store. How many interleaved Bloom
filter are used is defined by the user. Each interleaved Bloom filter has a so
called expression threshold and stores minimisers with an occurrence greater
than or equal to its own expression threshold and smaller than the next biggest
expression threshold (if there is no bigger expression threshold, all greater
than or equal to the threshold are stored). These expression thresholds are
then used during the query (called estimate) to approximate the expression
values of given transcripts.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/seqan-needle
--- End Message ---
--- Begin Message ---
Source: seqan-needle
Source-Version: 1.0.1.0.0.git.3011926+ds-1
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
seqan-needle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1023...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated seqan-needle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 19 Oct 2022 18:58:32 +0200
Source: seqan-needle
Binary: seqan-needle seqan-needle-dbgsym seqan-needle-doc
Architecture: source amd64 all
Version: 1.0.1.0.0.git.3011926+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Description:
seqan-needle - pre-filter for the counting of very large collections of
nucleoti
seqan-needle-doc - HTML documentation for seqan-needle and its APIs
Closes: 1023322
Changes:
seqan-needle (1.0.1.0.0.git.3011926+ds-1) unstable; urgency=medium
.
* Initial release (Closes: #1023322)
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