Package: wnpp Severity: wishlist Subject: ITP: snippy -- rapid haploid variant calling and core genome alignment Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : snippy Version : 4.6.0 Upstream Author : Torsten Seemann * URL : https://github.com/tseemann/snippy/ * License : GPL-2+ Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : rapid haploid variant calling and core genome alignment Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. It will find both substitutions (snps) and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind, and produces a consistent set of output files in a single folder. It can then take a set of Snippy results using the same reference and generate a core SNP alignment (and ultimately a phylogenomic tree). Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/snippy
