Very cool! Am Fri, Feb 11, 2022 at 10:08:25PM +0100 schrieb Pierre Gruet: > Package: wnpp > Severity: wishlist > Owner: Debian-med team <debian-...@lists.debian.org> > X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org > > * Package name : rockhopper > Version : 2.0.3 > Upstream Author : Brian Tjaden > * URL : https://cs.wellesley.edu/~btjaden/Rockhopper > * License : GPL-3+ > Programming Lang: Java > Description : system for analyzing bacterial RNA-seq data > > Rockhopper is a comprehensive and user-friendly system for > computational analysis of bacterial RNA-seq data. As input, Rockhopper > takes RNA sequencing reads output by high-throughput sequencing > technology (FASTQ, QSEQ, FASTA, SAM, or BAM files). Rockhopper supports > the following tasks: > * Reference based transcript assembly (when one or more reference > genomes are available) > - Aligning reads to genomes > - Assembling transcripts > - Identifying transcript boundaries and novel transcripts such as > small RNAs > * De novo transcript assembly (when reference genomes are unavailable) > * Normalizing data from different experiments > * Quantifying transcript abundance > * Testing for differential gene expression > * Characterizing operon structures > * Visualizing results in a genome browser > > The package will be team-maintained by Debian-med team. > >
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