Your message dated Mon, 22 Jun 2020 21:00:10 +0000
with message-id <e1jnty2-0006fb...@fasolo.debian.org>
and subject line Bug#931826: fixed in mindthegap 2.2.2-1
has caused the Debian Bug report #931826,
regarding ITP: mindthegap -- Performs detection and assembly of DNA insertion
variants in NGS read datasets.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
931826: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=931826
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: mindthegap -- Performs detection and assembly of DNA insertion
variants in NGS read datasets.
Package: wnpp
Owner: Shayan Doust <he...@shayandoust.me>
Severity: wishlist
* Package name : mindthegap
Version : 2.2.0
Upstream Author : GATB <gatb.inria.fr>
* URL : http://github.com/GATB/MindTheGap
* License : AGPL-3
Programming Lang: C
Description : Performs detection and assembly of DNA insertion variants
in NGS read datasets.
Designed to call insertions of any size, whether they are novel or
duplicated, homozygous or heterozygous in the donor genome. It takes as
input a set of reads and a reference genome. It outputs two sets of
FASTA sequences: one is the set of breakpoints of detection insertion
sites, the other is the set of assembled insertions for each
breakpoint. MindTheGap can also be used as a genome assembly finishing
tool. It can fill the gaps between a set of input contigs without any a
priori on their relative order and orientation. It outputs the results
in gfa file.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/mindthegap
--- End Message ---
--- Begin Message ---
Source: mindthegap
Source-Version: 2.2.2-1
Done: Shayan Doust <he...@shayandoust.me>
We believe that the bug you reported is fixed in the latest version of
mindthegap, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 931...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shayan Doust <he...@shayandoust.me> (supplier of updated mindthegap package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 02 Jul 2019 13:41:39 +0100
Source: mindthegap
Binary: mindthegap mindthegap-dbgsym mindthegap-examples
Architecture: source amd64 all
Version: 2.2.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Shayan Doust <he...@shayandoust.me>
Description:
mindthegap - performs detection and assembly of DNA insertion variants in NGS
mindthegap-examples - optional scripts and example resources for mindthegap
Closes: 931826
Changes:
mindthegap (2.2.2-1) unstable; urgency=medium
.
* Initial release (Closes: #931826)
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mindthegap-dbgsym_2.2.2-1_amd64.deb
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mindthegap-examples_2.2.2-1_all.deb
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mindthegap_2.2.2-1_amd64.buildinfo
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