Your message dated Wed, 29 Apr 2020 10:55:50 +0200
with message-id <20200429085550.gl1...@an3as.eu>
and subject line Close duplicate (Was: Bug#958951: ITP: python-pauvre -- QC and
genome browser plotting Oxford Nanopore and PacBio long reads)
has caused the Debian Bug report #958951,
regarding ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore
and PacBio long reads
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
958951: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958951
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--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: python-pauvre -- QC and genome browser plotting Oxford Nanopore
and PacBio long reads
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : python-pauvre
Version : 0.1924
Upstream Author : Darrin T. Schultz
* URL : https://github.com/conchoecia/pauvre
* License : GPL-3+
Programming Lang: Python
Description : QC and genome browser plotting Oxford Nanopore and PacBio
long reads
Pauvre is a plotting package designed for nanopore and PacBio long reads.
.
This package currently hosts four scripts for plotting and/or printing stats.
.
pauvre marginplot
Takes a fastq file as input and outputs a marginal histogram with a
heatmap.
pauvre stats
Takes a fastq file as input and prints out a table of stats, including
how many basepairs/reads there are for a length/mean quality cutoff.
This is also automagically called when using pauvre marginplot
pauvre redwood
Method of representing circular genomes. A redwood plot contains long
reads as "rings" on the inside, a gene annotation "cambrium/phloem",
and a RNAseq "bark". The input is .bam files for the long reads and
RNAseq data, and a .gff file for the annotation.
pauvre synteny
Makes a synteny plot of circular genomes. Finds the most parsimonius
rotation to display the synteny of all the input genomes with the
fewest crossings-over. Input is one .gff file per circular genome
and one directory of gene alignments.
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/python-pauvre
--- End Message ---
--- Begin Message ---
That's just a dupllicate of #958996 - simply closing.
--- End Message ---
