Your message dated Sun, 04 Aug 2019 19:00:12 +0000
with message-id <e1huljo-000bqj...@fasolo.debian.org>
and subject line Bug#926978: fixed in biobambam2 2.0.95-1
has caused the Debian Bug report #926978,
regarding ITP: biobambam2 -- tools for early stage alignment file processing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
926978: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926978
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Subject: ITP: biobambam2 -- tools for early stage alignment file processing
Package: wnpp
Owner: Andreas Tille <ti...@debian.org>
Severity: wishlist
* Package name : biobambam2
Version : 2.0.95
Upstream Author : German Tischler <tisch...@mpi-cbg.de>
* URL : https://gitlab.com/german.tischler/biobambam2
* License : GPL-3+
Programming Lang: C++
Description : tools for early stage alignment file processing
This package contains some tools for processing BAM files including
.
bamsormadup: parallel sorting and duplicate marking
bamcollate2: reads BAM and writes BAM reordered such that alignment
or collated by query name
bammarkduplicates: reads BAM and writes BAM with duplicate alignments
marked using the BAM flags field
bammaskflags: reads BAM and writes BAM while masking (removing) bits
from the flags column
bamrecompress: reads BAM and writes BAM with a defined compression
setting. This tool is capable of multi-threading.
bamsort: reads BAM and writes BAM resorted by coordinates or
query name
bamtofastq: reads BAM and writes FastQ; output can be collated
or uncollated by query name
Remark: This package is maintained by Debian Med Packaging Team at
https://salsa.debian.org/med-team/biobambam2
--- End Message ---
--- Begin Message ---
Source: biobambam2
Source-Version: 2.0.95-1
We believe that the bug you reported is fixed in the latest version of
biobambam2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 926...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated biobambam2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 13 Apr 2019 07:15:32 +0200
Source: biobambam2
Binary: biobambam2
Architecture: source amd64
Version: 2.0.95-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
biobambam2 - tools for early stage alignment file processing
Closes: 926978
Changes:
biobambam2 (2.0.95-1) unstable; urgency=medium
.
* Initial release (Closes: #926978)
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biobambam2_2.0.95-1.debian.tar.xz
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