Your message dated Fri, 21 Oct 2016 13:00:09 +0000
with message-id <e1bxzqf-0002ye...@franck.debian.org>
and subject line Bug#838070: fixed in bio-eagle 2.3-1
has caused the Debian Bug report #838070,
regarding ITP: bio-eagle -- Haplotype phasing within a genotyped
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
838070: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838070
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi <bob.dyb...@gmail.com>
Package name: bio-eagle
URL: https://data.broadinstitute.org/alkesgroup/Eagle/
License: GPL3+
Description: Haplotype phasing within a genotyped cohort or using a
phased reference panel
Eagle estimates haplotype phase either within a genotyped cohort or using a
phased reference panel. The basic idea of the Eagle1 algorithm is to harness
identity-by-descent among distant relatives—which is pervasive at very large
sample sizes but rare among smaller numbers of samples—to rapidly call phase
using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a
full probabilistic model similar to the diploid Li-Stephens model used by
previous HMM-based methods.
This package will be maintained by the Debian Med team at:
https://anonscm.debian.org/git/debian-med/eagle.git
Dylan
--- End Message ---
--- Begin Message ---
Source: bio-eagle
Source-Version: 2.3-1
We believe that the bug you reported is fixed in the latest version of
bio-eagle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 838...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <bob.dyb...@gmail.com> (supplier of updated bio-eagle package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 18 Sep 2016 23:08:34 +0200
Source: bio-eagle
Binary: bio-eagle bio-eagle-examples
Architecture: source amd64 all
Version: 2.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Dylan Aïssi <bob.dyb...@gmail.com>
Description:
bio-eagle - Haplotype phasing within a genotyped cohort or using a phased ref
bio-eagle-examples - Examples for bio-eagle
Closes: 838070
Changes:
bio-eagle (2.3-1) unstable; urgency=medium
.
* Initial release. (Closes: #838070)
Checksums-Sha1:
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bio-eagle_2.3-1.debian.tar.xz
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bio-eagle-dbgsym_2.3-1_amd64.deb
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bio-eagle-examples_2.3-1_all.deb
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bio-eagle_2.3-1_amd64.deb
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