Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : sumatra Version : 1.0.03 Upstream Author : Tiayyba Riaz e.a * URL : http://metabarcoding.org/sumatra * License : CeCILL-2 Programming Lang: C Description : fast and exact comparison and clustering of sequences With the development of next-generation sequencing, efficient tools are needed to handle millions of sequences in reasonable amounts of time. Sumatra is a program developed by the LECA. Sumatra aims to compare sequences in a way that is fast and exact at the same time. This tool has been developed to be adapted to the type of data generated by DNA metabarcoding, i.e. entirely sequenced, short markers. Sumatra computes the pairwise alignment scores from one dataset or between two datasets, with the possibility to specify a similarity threshold under which pairs of sequences that have a lower similarity are not reported. The output can then go through a classification process with programs such as MCL or MOTHUR. Remark: This package was prepared by Tim Booth for BioLinux as a predependency for QIIME 1.9.1. It is taken over by Debian Med and maintained at svn://anonscm.debian.org/debian-med/trunk/packages/sumatra/trunk/ -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/20150805194120.7285.73730.report...@mail.an3as.eu
