Your message dated Thu, 16 May 2013 13:00:19 +0000
with message-id <e1ucxn9-0006z0...@franck.debian.org>
and subject line Bug#378290: fixed in proalign 0.603-1
has caused the Debian Bug report #378290,
regarding ITP: proalign -- Probabilistic multiple alignment program
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
378290: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=378290
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nos...@plessy.org>
Package name : proalign
Version : 0.5alpha1
Upstream Author : Ari Löytynoja & Michel C. Milinkovitch
URL : http://evol-linux1.ulb.ac.be/ueg/ProAlign/
License : (GPL, LGPL, BSD, MIT/X, etc.)
Description : Probabilistic multiple alignment program
ProAlign performs probabilistic sequence alignments using hidden Markov
models (HMM). It includes a graphical interface (GUI) allowing to (i)
perform alignments of nucleotide or amino-acid sequences, (ii) view the
quality of solutions, (iii) filter the unreliable alignment regions and
(iv) export alignments to other softwares.
.
ProAlign uses a progressive method, such that multiple alignment is
created stepwise by performing pairwise alignments in the nodes of a
guide tree. Sequences are described with vectors of character
probabilities, and each pairwise alignment reconstructs the ancestral
(parent) sequence by computing the probabilities of different
characters according to an evolutionary model. It has been published in
Bioinformatics. 2003 Aug 12;19(12):1505-13.
.
Homepage: http://evol-linux1.ulb.ac.be/ueg/ProAlign/
-- System Information:
Debian Release: testing/unstable
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
--- End Message ---
--- Begin Message ---
Source: proalign
Source-Version: 0.603-1
We believe that the bug you reported is fixed in the latest version of
proalign, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 378...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Thorsten Alteholz <deb...@alteholz.de> (supplier of updated proalign package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Tue, 01 May 2013 18:00:00 +0200
Source: proalign
Binary: proalign
Architecture: source amd64
Version: 0.603-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Thorsten Alteholz <deb...@alteholz.de>
Description:
proalign - Probabilistic multiple alignment program
Closes: 378290
Changes:
proalign (0.603-1) unstable; urgency=low
.
* Initial release (Closes: #378290)
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