Your message dated Sat, 03 Mar 2012 16:47:16 +0000
with message-id <e1s3s72-0004eo...@franck.debian.org>
and subject line Bug#660762: fixed in bowtie2 2.0.0-beta5-1
has caused the Debian Bug report #660762,
regarding ITP: bowtie2 -- ultrafast memory-efficient short read aligner
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
660762: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=660762
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Alexandre Mestiashvili <a...@biotec.tu-dresden.de>
* Package name : bowtie2
Version : 2.0.0-beta5
Upstream Author : Ben Langmead <blang...@jhsph.edu>
* URL : http://bowtie-bio.sourceforge.net/bowtie2/
* License : GPL
Programming Lang: C++, Perl
Description : ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
--- End Message ---
--- Begin Message ---
Source: bowtie2
Source-Version: 2.0.0-beta5-1
We believe that the bug you reported is fixed in the latest version of
bowtie2, which is due to be installed in the Debian FTP archive:
bowtie2-examples_2.0.0-beta5-1_all.deb
to main/b/bowtie2/bowtie2-examples_2.0.0-beta5-1_all.deb
bowtie2_2.0.0-beta5-1.debian.tar.gz
to main/b/bowtie2/bowtie2_2.0.0-beta5-1.debian.tar.gz
bowtie2_2.0.0-beta5-1.dsc
to main/b/bowtie2/bowtie2_2.0.0-beta5-1.dsc
bowtie2_2.0.0-beta5-1_amd64.deb
to main/b/bowtie2/bowtie2_2.0.0-beta5-1_amd64.deb
bowtie2_2.0.0-beta5.orig.tar.bz2
to main/b/bowtie2/bowtie2_2.0.0-beta5.orig.tar.bz2
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 660...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Mestiashvili <a...@biotec.tu-dresden.de> (supplier of updated bowtie2
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 22 Feb 2012 11:03:03 +0100
Source: bowtie2
Binary: bowtie2 bowtie2-examples
Architecture: source amd64 all
Version: 2.0.0-beta5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Alexandre Mestiashvili <a...@biotec.tu-dresden.de>
Description:
bowtie2 - ultrafast memory-efficient short read aligner
bowtie2-examples - Examples for bowtie2,
Closes: 660762
Changes:
bowtie2 (2.0.0-beta5-1) unstable; urgency=low
.
[ Alexandre Mestiashvili ]
* Initial release (Closes: #660762)
Checksums-Sha1:
c05eb3cae55b361ec9b96eab46ff44bd71561a78 1418 bowtie2_2.0.0-beta5-1.dsc
9b55fde5c94bccacd2e82e2a37341773e7c3e117 4507623
bowtie2_2.0.0-beta5.orig.tar.bz2
8c3754b02e9364a831d0f90f830d1c9d3d1d228e 2932
bowtie2_2.0.0-beta5-1.debian.tar.gz
2e0f510ae8de45b642ce150d5110ee5b4d737e44 829346 bowtie2_2.0.0-beta5-1_amd64.deb
27eae812f492e31fc29a8c0c58ef7137328ce99e 4876672
bowtie2-examples_2.0.0-beta5-1_all.deb
Checksums-Sha256:
9618f21bc636cadacc8446e9aa00fa9d198705d60d420724cb5497489308287f 1418
bowtie2_2.0.0-beta5-1.dsc
ac81a69bf9d57357d87dccaec614ae7514063116d5fd7ee2c16a7a4529666f16 4507623
bowtie2_2.0.0-beta5.orig.tar.bz2
da2c3fe33ca1d5f69d12fba70e80e155169c8d00cbe1a72e02b28aad58529252 2932
bowtie2_2.0.0-beta5-1.debian.tar.gz
59ca5a847ab0006922ac16a7f255e0be04ad0a4dace7bc4d1c5a927f460a632f 829346
bowtie2_2.0.0-beta5-1_amd64.deb
917ce6e6b535ff7bb173be40778f6bf560e5a61c090f1fbb97e056b9d186ccfb 4876672
bowtie2-examples_2.0.0-beta5-1_all.deb
Files:
af6c3e275dc126f9fcbee921dd954ad5 1418 science extra bowtie2_2.0.0-beta5-1.dsc
4189db1cf41dc2a13384f9856f91ac7b 4507623 science extra
bowtie2_2.0.0-beta5.orig.tar.bz2
bea618aaa62a694396158f7a76e52b09 2932 science extra
bowtie2_2.0.0-beta5-1.debian.tar.gz
28d37a055cd901f898796bcfe2326c9b 829346 science extra
bowtie2_2.0.0-beta5-1_amd64.deb
4a140fcc001465b433ed2e810002b395 4876672 science extra
bowtie2-examples_2.0.0-beta5-1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)
iEUEARECAAYFAk9E3CsACgkQYDBbMcCf01oP+ACgnPX06mrOW9D3OACtmPzDvJFM
OhoAmMwJb25Az2LlboeNgacpZd1AQT8=
=D+2f
-----END PGP SIGNATURE-----
--- End Message ---
