Package: wnpp Severity: wishlist * Package name : ugene * URL : http://ugene.unipro.ru/ * License : GPL Description : integrated bioinformatics tools
Unipro UGENE: Integrated Bioinformatics Tools UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install. Features Screenshots Feature-rich sequence viewer and annotator Swine flu in UGENE Workflow Designer visual interface Workflow Designer Multiple sequence alignment editor Multiple alignment Integrated tools Multiple sequence alignment using MUSCLE 3, KAlign, Clustal; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Cloning in silico capabilities; Queries to NCBI BLAST and CDD databases; Protein secondary structure prediction using GOR IV and PSIPRED; Phylogenetic analysis with Phylip; Search for restriction enzymes and integration with REBASE; Extremely fast repeat finder; DNA reference assembly using Bowtie; Search for transcription factor binding sites using SITECON; Protein back translation; ORF finder; Complete Smith-Waterman algorithm implementation; Support for external tools: BLAST+, MAFFT, T-Coffee. User interface Visual and interactive genome browsing including circular plasmid view; Multiple alignment editor; Chromatograms visualization; 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support; Phylogenetic tree viewer; Dot plot visualization; Query designer enables search for complex annotation patterns; Easy to use workflow designer for custom computational workflows. High performance computing in UGENE Complete support of modern multicore processors and SSE instructions; Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream; Support for cloud computing: running computational tasks on Amazon EC2 cloud; Support for supercomputers and distributed computing. Cooperation Can be used for education purposes in schools and universities; Features to be included into the next release are initiated by users; UGENE team is ready for collaboration in related projects, both free or commercial. -- To UNSUBSCRIBE, email to debian-wnpp-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20110422142538.3256.58593.reportbug@Toshiba.siemens
