Stephen P. Molnar, Ph.D. Life is a fuzzy
set
Foundation for Chemistry Stochastic and
multivariate
www.FoundationForChemistry.com
(614)312-7528 (c)
Skype: smolnar1
-----Original Message-----
From: steef [mailto:debian.li...@home.nl]
Sent: Tuesday, September 10, 2013 11:52 AM
To: debian
Subject: Re: Debian Testing/Jessie and OpenGL
On 10-09-13 13:30, Stephen P, Molnar wrote:
> I have installed jessie in an Oracle VBox on my laptop tp use as a
> test bed for new applications software without jeopardizing my native
> Linux production computer.
>
> Unfortunately, some of the candidate software I wish to evaluate
> appear to require OpenGL for correct operation. Although I have been
> usiing various distributions of Linux since shortly before the release
> of the RedHat Mother' Day distribution, I am not a computer person,
> but rather a research chemist.
>
> Here are some of the error messages that i get:
>
> OpenGL Warning: glGetFenceivNV not found in mesa table OpenGL Warning:
> glIsFenceNV not found in mesa table OpenGL Warning: glSetFenceNV not
> found in mesa table OpenGL Warning: glTestFenceNV not found in mesa
> table opengl extension not present, SSAO disable opengl extension
> GL_EXT_packed_depth_stencil is not present
>
> I question is: which additional packages should I install? I would
> appreciate being pointed in the correct direction.
>
> Thanks in advance.
>
>
hi
try libgl1-mesa-dev or something like that. if you install synaptic you can
search for the mesa-packages with openglx-possibilities and install them.
maybe this is of ame help.
reg.,
steef
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Thanks for the reply.
I added libgl1-mesa-dev, but that didn't solve the problem (not too
surprisingly - that would have been too simple). I did, however record the
run log, it's attached - perhaps there are clues buried there.
computation@inga:~$ cd Apps/pymol
computation@inga:~/Apps/pymol$ ./pymol
OpenGL Warning: glFlushVertexArrayRangeNV not found in mesa table
OpenGL Warning: glVertexArrayRangeNV not found in mesa table
OpenGL Warning: glCombinerInputNV not found in mesa table
OpenGL Warning: glCombinerOutputNV not found in mesa table
OpenGL Warning: glCombinerParameterfNV not found in mesa table
OpenGL Warning: glCombinerParameterfvNV not found in mesa table
OpenGL Warning: glCombinerParameteriNV not found in mesa table
OpenGL Warning: glCombinerParameterivNV not found in mesa table
OpenGL Warning: glFinalCombinerInputNV not found in mesa table
OpenGL Warning: glGetCombinerInputParameterfvNV not found in mesa table
OpenGL Warning: glGetCombinerInputParameterivNV not found in mesa table
OpenGL Warning: glGetCombinerOutputParameterfvNV not found in mesa table
OpenGL Warning: glGetCombinerOutputParameterivNV not found in mesa table
OpenGL Warning: glGetFinalCombinerInputParameterfvNV not found in mesa table
OpenGL Warning: glGetFinalCombinerInputParameterivNV not found in mesa table
OpenGL Warning: glDeleteFencesNV not found in mesa table
OpenGL Warning: glFinishFenceNV not found in mesa table
OpenGL Warning: glGenFencesNV not found in mesa table
OpenGL Warning: glGetFenceivNV not found in mesa table
OpenGL Warning: glIsFenceNV not found in mesa table
OpenGL Warning: glSetFenceNV not found in mesa table
OpenGL Warning: glTestFenceNV not found in mesa table
PyMOL(TM) Molecular Graphics System, Version 1.6.0.0.
Copyright (c) Schrodinger, LLC.
All Rights Reserved.
Created by Warren L. DeLano, Ph.D.
PyMOL is user-supported open-source software. Although some versions
are freely available, PyMOL is not in the public domain.
If PyMOL is helpful in your work or study, then please volunteer
support for our ongoing efforts to create open and affordable scientific
software by purchasing a PyMOL Maintenance and/or Support subscription.
More information can be found at "http://www.pymol.org";.
Enter "help" for a list of commands.
Enter "help <command-name>" for information on a specific command.
Hit ESC anytime to toggle between text and graphics.
Detected OpenGL version 2.0 or greater. Shaders available.
Detected GLSL version 1.40.
OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in your SPU
OpenGL graphics engine:
GL_VENDOR: Humper
GL_RENDERER: Chromium
GL_VERSION: 2.1 Chromium 1.9
Detected 4 CPU cores. Enabled multithreaded rendering.
OpenGL Warning: No pincher, please call crStateSetCurrentPointers() in your SPU
HEADER COMPLEX (HYDROLASE/PEPTIDE) 01-AUG-96 1YTI
TITLE SIV PROTEASE CRYSTALLIZED WITH PEPTIDE PRODUCT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SIV PROTEASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: SIV PROTEINASE;
COMPND 5 EC: 3.4.23.16;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: PEPTIDE PRODUCT;
COMPND 10 CHAIN: I;
COMPND 11 ENGINEERED: YES
ObjectMolecule: Read secondary structure assignments.
ObjectMolecule: Read crystal symmetry information.
Symmetry: Found 8 symmetry operators.
CmdLoad: "/home/computation/Apps/pymol/1yti.pdb" loaded as "1yti".
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
OpenGL Warning: Assertion failed: isNewKey, file
/mnt/tinderbox/add-4.2/src/VBox/GuestHost/OpenGL/state_tracker/state_texture.c,
line 631
PyMOL: normal program termination.
./pymol: line 3: 3137 Segmentation fault "/usr/bin/python"
"/home/computation/Apps/pymol/modules/pymol/__init__.py" "$@"
computation@inga:~/Apps/pymol$
