> > I have already set the ScritpAlias and it work fine. 

What directory is your ScriptAlias set to? 

Now I'd like to
> > have under the public_html dir of one user (my user) a directory tree
> > wicht contain one entry for every project I am working on.

Is this directory under the directory named in the ScriptAlias directive?

> > The problem is that I cannot execupe some perl cgi, Netscape give me this
> > error
> > ---
> > You don't have permission to access /~gianluca/effeesse/p.pl on this server.

This is exactly the error that occurs when the directory is not enabled
for executing scripts.

> > 
> > The script have the correct attributes and the directory is accessible (I
> > can get the html file and also run the php3 script)
> > 

The php scripts are enabled by a different directive so they could be
executing when cgi scripts don't.

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