Étienne Mollier pushed to branch master at Debian Med / emmax
Commits: 048e41f7 by Étienne Mollier at 2025-07-13T13:31:41+02:00 d/control: emmax breaks libatlas3-base. The libatlas3-base package has been removed from trixie, but apt still tries to preserve the obsolete package instead of upgrading emmax. Closes: #1109178 - - - - - dfd1e53d by Étienne Mollier at 2025-07-13T13:33:47+02:00 d/control: fix duplicate first name of uploader. - - - - - c4165c1a by Étienne Mollier at 2025-07-13T13:34:16+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - 41c5c801 by Étienne Mollier at 2025-07-13T13:35:47+02:00 d/p/*.patch: normalize Last-Update timestamp. - - - - - 8642b019 by Étienne Mollier at 2025-07-13T13:40:27+02:00 d/changelog: ready for team upload to unstable. - - - - - 9 changed files: - debian/changelog - debian/control - debian/patches/aborts.patch - debian/patches/clean.patch - debian/patches/dynamic.patch - debian/patches/hardening.patch - debian/patches/install.patch - debian/patches/logfile.patch - debian/patches/syntax.patch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,16 @@ +emmax (0~beta.20100307-6) unstable; urgency=medium + + * Team upload. + * d/control: emmax breaks libatlas3-base. + The libatlas3-base package has been removed from trixie, but apt still + tries to preserve the obsolete package instead of upgrading emmax. + (Closes: #1109178) + * d/control: fix duplicate first name of uploader. + * d/control: declare compliance to standards version 4.7.2. + * d/p/*.patch: normalize Last-Update timestamp. + + -- Étienne Mollier <[email protected]> Sun, 13 Jul 2025 13:36:34 +0200 + emmax (0~beta.20100307-5) unstable; urgency=medium * Put libblas-dev as first alternative to be more portable ===================================== debian/control ===================================== @@ -1,6 +1,6 @@ Source: emmax Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: SteffenSteffen Moeller <[email protected]>, +Uploaders: Steffen Moeller <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional @@ -8,7 +8,7 @@ Build-Depends: debhelper-compat (= 13), libblas-dev | libopenblas-dev | libblas.so, liblapacke-dev, zlib1g-dev -Standards-Version: 4.6.2 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/emmax Vcs-Git: https://salsa.debian.org/med-team/emmax.git Homepage: http://genome.sph.umich.edu/wiki/EMMAX @@ -18,6 +18,7 @@ Package: emmax Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} +Breaks: libatlas3-base (<< 3.10.3-13) Description: genetic mapping considering population structure EMMAX is a statistical test for large scale human or model organism association mapping accounting for the sample structure. In addition ===================================== debian/patches/aborts.patch ===================================== @@ -1,5 +1,5 @@ Author: Steffen Moeller -Last-Update: 2013-06-11 09:09:19 +0000 +Last-Update: 2013-06-11 Description: Clean exit when no options are given Index: emmax-0~beta.20100307/emmax-kin.c ===================================== debian/patches/clean.patch ===================================== @@ -1,5 +1,5 @@ Author: Steffen Moeller -Last-Update: 2013-06-11 09:09:19 +0000 +Last-Update: 2013-06-11 Description: Proper cleaning Index: emmax-0~beta.20100307/makefile ===================================== debian/patches/dynamic.patch ===================================== @@ -1,5 +1,5 @@ Author: Steffen Moeller -Last-Update: 2013-06-11 09:09:19 +0000 +Last-Update: 2013-06-11 Description: Dynamic linking Index: emmax-0~beta.20100307/makefile ===================================== debian/patches/hardening.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Wed, 20 Mar 2019 18:28:20 +0100 +Last-Update: 2019-03-20 Description: Propagate hardening options (unfortunately this does not help) --- a/makefile ===================================== debian/patches/install.patch ===================================== @@ -1,5 +1,5 @@ Author: Steffen Moeller -Last-Update: 2013-06-11 09:09:19 +0000 +Last-Update: 2013-06-11 Description: Proper install target Index: emmax-0~beta.20100307/makefile ===================================== debian/patches/logfile.patch ===================================== @@ -1,5 +1,5 @@ Author: Steffen Moeller -Last-Update: 2013-06-11 09:09:19 +0000 +Last-Update: 2013-06-11 Description: Log only if file pointer exists Index: emmax-0~beta.20100307/emmax.c ===================================== debian/patches/syntax.patch ===================================== @@ -1,5 +1,5 @@ Author: Andreas Tille <[email protected]> -Last-Update: Tue, 28 Nov 2023 17:29:11 +0100 +Last-Update: 2023-11-28 Description: Suppress warnings to clean up build log --- a/emmax.c View it on GitLab: https://salsa.debian.org/med-team/emmax/-/compare/6c77b38aa3e900907113409431668039607f32d7...8642b019df6f1626993543fc02303c71d4344c41 -- View it on GitLab: https://salsa.debian.org/med-team/emmax/-/compare/6c77b38aa3e900907113409431668039607f32d7...8642b019df6f1626993543fc02303c71d4344c41 You're receiving this email because of your account on salsa.debian.org.
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