harish chavre pushed to branch master at Debian Med / bitseq
Commits: 5c981f1c by Harish chavre at 2025-06-21T08:52:57+00:00 Add README.debian explaining use of precomputed test data in autopkgtest - - - - - 1 changed file: - + debian/tests/README.Debian Changes: ===================================== debian/tests/README.Debian ===================================== @@ -0,0 +1,22 @@ +Debian Tests Data +================= + +The autopkgtest for bitseq was updated to use pregenerated test +data instead of dynamically running bowtie. + +This is necessary because bowtie is not available on 32-bit +architectures (such as i386, armel, armhf). With this change, +the test is skipped on those architectures and runs normally +elsewhere. + +The dataset is shipped via the 'debian-tests-data' component +tarball. It contains Bowtie index files and a SAM alignment file +required to test bitseq. + +To regenerate the dataset manually on a 64-bit machine: + + bowtie-build -f Ref.fasta index + bowtie -q -v 3 --all -m 100 --sam index Reads.fastq -S out.sam + +Make sure bowtie is installed and available in your PATH. + View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/commit/5c981f1cd518e864a254e793f193fe31e951d43c -- View it on GitLab: https://salsa.debian.org/med-team/bitseq/-/commit/5c981f1cd518e864a254e793f193fe31e951d43c You're receiving this email because of your account on salsa.debian.org.
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