Nilesh Patra pushed to branch master at Debian Med / fastdnaml
Commits: 596df407 by Nilesh Patra at 2024-04-07T14:47:19+05:30 Add patch to fix FTBFS with implicit-function-declaration (Closes: #1066709) - - - - - 00d0112e by Nilesh Patra at 2024-04-07T14:47:38+05:30 Bump Standards-Version to 4.6.2 (no changes needed) - - - - - 1ba1470a by Nilesh Patra at 2024-04-07T14:48:08+05:30 Upload to unstable - - - - - 4 changed files: - debian/changelog - debian/control - + debian/patches/fixup-implicit-function-declaration.patch - debian/patches/series Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +fastdnaml (1.2.2-16) unstable; urgency=medium + + * Team Upload. + * Add patch to fix FTBFS with + implicit-function-declaration (Closes: #1066709) + * Bump Standards-Version to 4.6.2 (no changes needed) + + -- Nilesh Patra <[email protected]> Sun, 07 Apr 2024 14:47:48 +0530 + fastdnaml (1.2.2-15) unstable; urgency=medium * Standards-Version: 4.5.1 (routine-update) ===================================== debian/control ===================================== @@ -5,7 +5,7 @@ Uploaders: Andreas Tille <[email protected]>, Section: science Priority: optional Build-Depends: debhelper-compat (= 13) -Standards-Version: 4.5.1 +Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/fastdnaml Vcs-Git: https://salsa.debian.org/med-team/fastdnaml.git Homepage: ftp://ftp.bio.indiana.edu/molbio/evolve/fastdnaml/fastDNAml.html ===================================== debian/patches/fixup-implicit-function-declaration.patch ===================================== @@ -0,0 +1,63 @@ +--- a/source/fastDNAml.h ++++ b/source/fastDNAml.h +@@ -5,6 +5,7 @@ + #define headerDate "March 9, 1998" + + #ifndef dnaml_h ++#include <stdlib.h> + + /* Compile time switches for various updates to program: + * 0 gives original version +@@ -218,7 +219,7 @@ + + #if ANSI || MALLOC_VOID + void *malloc(); +-#else ++#elif !defined(__STDC__) + char *malloc(); + #endif + +--- a/source/fastDNAml.c ++++ b/source/fastDNAml.c +@@ -204,6 +204,8 @@ + + #include <stdio.h> + #include <math.h> ++#include <unistd.h> ++#include <string.h> + #include "fastDNAml.h" /* Requires version 1.2 */ + + #if Master || Slave +@@ -2853,32 +2855,6 @@ + } /* buildSimpleTree */ + + +-char * strchr (char *str, int chr) +- { /* strchr */ +- int c; +- +- while (c = *str) {if (c == chr) return str; str++;} +- return (char *) NULL; +- } /* strchr */ +- +- +-char * strstr (char *str1, char *str2) +- { /* strstr */ +- char *s1, *s2; +- int c; +- +- while (*(s1 = str1)) { +- s2 = str2; +- do { +- if (! (c = *s2++)) return str1; +- } +- while (*s1++ == c); +- str1++; +- } +- return (char *) NULL; +- } /* strstr */ +- +- + boolean readKeyValue (char *string, char *key, char *format, void *value) + { /* readKeyValue */ + ===================================== debian/patches/series ===================================== @@ -2,3 +2,4 @@ Makefile.patch scripts.patch hardening.patch cross.patch +fixup-implicit-function-declaration.patch View it on GitLab: https://salsa.debian.org/med-team/fastdnaml/-/compare/45a7df96e9c18365a9aff09e55387a417ddf006f...1ba1470ac35cbc7b216893c907ac0aa43421e1d3 -- View it on GitLab: https://salsa.debian.org/med-team/fastdnaml/-/compare/45a7df96e9c18365a9aff09e55387a417ddf006f...1ba1470ac35cbc7b216893c907ac0aa43421e1d3 You're receiving this email because of your account on salsa.debian.org.
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